Hb_000590_080

Information

Type -
Description -
Location Contig590: 118289-122859
Sequence    

Annotation

kegg
ID rcu:RCOM_0152430
description cation efflux protein/ zinc transporter, putative
nr
ID XP_012072945.1
description PREDICTED: metal tolerance protein 11 [Jatropha curcas]
swissprot
ID Q5NA18
description Metal tolerance protein 5 OS=Oryza sativa subsp. japonica GN=MTP5 PE=2 SV=1
trembl
ID A0A067KMD3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08412 PE=4 SV=1
Gene Ontology
ID GO:0005770
description metal tolerance protein 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50200: 118420-122765
cDNA
(Sanger)
(ID:Location)		 012_J09.ab1: 118466-121590 , 021_J14.ab1: 118427-121544

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000590_080 0.0 - - PREDICTED: metal tolerance protein 11 [Jatropha curcas]
2 Hb_003050_090 0.1301140359 - - lupus la ribonucleoprotein, putative [Ricinus communis]
3 Hb_060437_010 0.1395636512 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
4 Hb_031862_170 0.1411815384 - - immunophilin, putative [Ricinus communis]
5 Hb_004931_040 0.1648249229 - - splicing factor-related family protein [Populus trichocarpa]
6 Hb_001034_020 0.1655922477 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
7 Hb_000101_210 0.16928926 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]
8 Hb_000692_170 0.1693407001 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
9 Hb_000173_370 0.1717654479 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
10 Hb_000331_480 0.1718652124 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
11 Hb_000890_220 0.1724239583 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
12 Hb_002675_190 0.1748372508 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_003506_040 0.1765014586 - - hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]
14 Hb_000779_040 0.17777139 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
15 Hb_088542_010 0.1780242112 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
16 Hb_012760_200 0.178196117 - - protein phsophatase-2a, putative [Ricinus communis]
17 Hb_000787_100 0.1792112383 - - PREDICTED: thiamine thiazole synthase, chloroplastic [Jatropha curcas]
18 Hb_002897_040 0.1809881621 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
19 Hb_000018_160 0.1827821147 - - nitrate transporter, putative [Ricinus communis]
20 Hb_002609_100 0.1831891088 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000590_080 Hb_000590_080 Hb_003050_090 Hb_003050_090 Hb_000590_080--Hb_003050_090 Hb_060437_010 Hb_060437_010 Hb_000590_080--Hb_060437_010 Hb_031862_170 Hb_031862_170 Hb_000590_080--Hb_031862_170 Hb_004931_040 Hb_004931_040 Hb_000590_080--Hb_004931_040 Hb_001034_020 Hb_001034_020 Hb_000590_080--Hb_001034_020 Hb_000101_210 Hb_000101_210 Hb_000590_080--Hb_000101_210 Hb_003050_090--Hb_060437_010 Hb_001140_080 Hb_001140_080 Hb_003050_090--Hb_001140_080 Hb_003050_090--Hb_001034_020 Hb_001178_060 Hb_001178_060 Hb_003050_090--Hb_001178_060 Hb_000953_140 Hb_000953_140 Hb_003050_090--Hb_000953_140 Hb_001259_030 Hb_001259_030 Hb_003050_090--Hb_001259_030 Hb_060437_010--Hb_001034_020 Hb_012760_200 Hb_012760_200 Hb_060437_010--Hb_012760_200 Hb_060437_010--Hb_001178_060 Hb_000025_750 Hb_000025_750 Hb_060437_010--Hb_000025_750 Hb_000640_210 Hb_000640_210 Hb_060437_010--Hb_000640_210 Hb_005568_070 Hb_005568_070 Hb_031862_170--Hb_005568_070 Hb_004102_130 Hb_004102_130 Hb_031862_170--Hb_004102_130 Hb_000156_030 Hb_000156_030 Hb_031862_170--Hb_000156_030 Hb_003673_020 Hb_003673_020 Hb_031862_170--Hb_003673_020 Hb_004032_460 Hb_004032_460 Hb_031862_170--Hb_004032_460 Hb_002675_190 Hb_002675_190 Hb_004931_040--Hb_002675_190 Hb_001439_180 Hb_001439_180 Hb_004931_040--Hb_001439_180 Hb_160818_010 Hb_160818_010 Hb_004931_040--Hb_160818_010 Hb_004931_040--Hb_000953_140 Hb_000331_480 Hb_000331_480 Hb_004931_040--Hb_000331_480 Hb_004931_040--Hb_001034_020 Hb_001034_020--Hb_000331_480 Hb_001034_020--Hb_001439_180 Hb_001034_020--Hb_012760_200 Hb_004032_350 Hb_004032_350 Hb_001034_020--Hb_004032_350 Hb_001034_020--Hb_002675_190 Hb_004206_040 Hb_004206_040 Hb_000101_210--Hb_004206_040 Hb_000544_120 Hb_000544_120 Hb_000101_210--Hb_000544_120 Hb_035360_010 Hb_035360_010 Hb_000101_210--Hb_035360_010 Hb_000779_040 Hb_000779_040 Hb_000101_210--Hb_000779_040 Hb_000211_080 Hb_000211_080 Hb_000101_210--Hb_000211_080 Hb_000890_220 Hb_000890_220 Hb_000101_210--Hb_000890_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
511.394 101.452 8.12592 19.7388 444.436 242.364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.2574 18.0673 88.3118 111.574 1.24925

CAGE analysis