Hb_002627_070

Information

Type -
Description -
Location Contig2627: 139498-139824
Sequence    

Annotation

kegg
ID rcu:RCOM_0853230
description hypothetical protein
nr
ID XP_002517435.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RUJ0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0853230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27434: 136979-138574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002627_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_114638_010 0.2595056945 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Jatropha curcas]
3 Hb_188411_010 0.2777427097 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
4 Hb_000302_070 0.279280521 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
5 Hb_133605_010 0.2937782511 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
6 Hb_005048_110 0.2981541177 - - -
7 Hb_002397_060 0.3064739329 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000406_010 0.3072520498 - - PREDICTED: uncharacterized protein LOC105647846 [Jatropha curcas]
9 Hb_003740_010 0.3080896629 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002570_010 0.3081321772 - - hypothetical protein JCGZ_25329 [Jatropha curcas]
11 Hb_000413_150 0.3107761216 - - PREDICTED: uncharacterized protein LOC103709996 [Phoenix dactylifera]
12 Hb_006973_060 0.3120698489 - - Uncharacterized protein TCM_038475 [Theobroma cacao]
13 Hb_002447_020 0.3153989241 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001097_060 0.3162143605 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 8 [Jatropha curcas]
15 Hb_000707_040 0.3325137745 - - Uncharacterized protein TCM_021829 [Theobroma cacao]
16 Hb_006502_100 0.3338914989 - - hypothetical protein POPTR_0003s01580g [Populus trichocarpa]
17 Hb_000320_050 0.3374250989 - - bcr-associated protein, bap, putative [Ricinus communis]
18 Hb_071379_010 0.3408813336 - - PREDICTED: mitogen-activated protein kinase kinase kinase 3-like [Nelumbo nucifera]
19 Hb_028486_060 0.349569856 - - PREDICTED: putative germin-like protein 9-2 [Jatropha curcas]
20 Hb_161023_010 0.3505803802 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]

Gene co-expression network

sample Hb_002627_070 Hb_002627_070 Hb_114638_010 Hb_114638_010 Hb_002627_070--Hb_114638_010 Hb_188411_010 Hb_188411_010 Hb_002627_070--Hb_188411_010 Hb_000302_070 Hb_000302_070 Hb_002627_070--Hb_000302_070 Hb_133605_010 Hb_133605_010 Hb_002627_070--Hb_133605_010 Hb_005048_110 Hb_005048_110 Hb_002627_070--Hb_005048_110 Hb_002397_060 Hb_002397_060 Hb_002627_070--Hb_002397_060 Hb_001021_160 Hb_001021_160 Hb_114638_010--Hb_001021_160 Hb_001097_060 Hb_001097_060 Hb_114638_010--Hb_001097_060 Hb_002447_020 Hb_002447_020 Hb_114638_010--Hb_002447_020 Hb_000853_260 Hb_000853_260 Hb_114638_010--Hb_000853_260 Hb_162378_010 Hb_162378_010 Hb_114638_010--Hb_162378_010 Hb_009189_020 Hb_009189_020 Hb_114638_010--Hb_009189_020 Hb_161023_010 Hb_161023_010 Hb_188411_010--Hb_161023_010 Hb_000406_010 Hb_000406_010 Hb_188411_010--Hb_000406_010 Hb_160233_020 Hb_160233_020 Hb_188411_010--Hb_160233_020 Hb_188411_010--Hb_133605_010 Hb_014919_020 Hb_014919_020 Hb_188411_010--Hb_014919_020 Hb_011903_010 Hb_011903_010 Hb_188411_010--Hb_011903_010 Hb_006973_060 Hb_006973_060 Hb_000302_070--Hb_006973_060 Hb_000723_070 Hb_000723_070 Hb_000302_070--Hb_000723_070 Hb_000105_110 Hb_000105_110 Hb_000302_070--Hb_000105_110 Hb_005601_030 Hb_005601_030 Hb_000302_070--Hb_005601_030 Hb_093385_010 Hb_093385_010 Hb_000302_070--Hb_093385_010 Hb_002343_030 Hb_002343_030 Hb_000302_070--Hb_002343_030 Hb_133605_010--Hb_000406_010 Hb_031403_030 Hb_031403_030 Hb_133605_010--Hb_031403_030 Hb_003740_010 Hb_003740_010 Hb_133605_010--Hb_003740_010 Hb_002570_010 Hb_002570_010 Hb_133605_010--Hb_002570_010 Hb_133605_010--Hb_161023_010 Hb_126648_010 Hb_126648_010 Hb_005048_110--Hb_126648_010 Hb_002321_040 Hb_002321_040 Hb_005048_110--Hb_002321_040 Hb_011609_040 Hb_011609_040 Hb_005048_110--Hb_011609_040 Hb_001329_170 Hb_001329_170 Hb_005048_110--Hb_001329_170 Hb_001329_190 Hb_001329_190 Hb_005048_110--Hb_001329_190 Hb_005048_110--Hb_002397_060 Hb_009620_090 Hb_009620_090 Hb_002397_060--Hb_009620_090 Hb_004162_230 Hb_004162_230 Hb_002397_060--Hb_004162_230 Hb_002397_060--Hb_001329_170 Hb_000556_130 Hb_000556_130 Hb_002397_060--Hb_000556_130 Hb_000544_030 Hb_000544_030 Hb_002397_060--Hb_000544_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11243 0.116108 1.28352 1.80183 1.25332 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.304134 0.23919 0 0 0

CAGE analysis