Hb_000723_070

Information

Type -
Description -
Location Contig723: 93562-101815
Sequence    

Annotation

kegg
ID cmo:103500819
description thylakoid lumenal 15.0 kDa protein 2, chloroplastic
nr
ID XP_012082402.1
description PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9LVV5
description Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis thaliana GN=At5g52970 PE=1 SV=2
trembl
ID A0A067K270
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16537 PE=4 SV=1
Gene Ontology
ID GO:0006725
description thylakoid lumenal kda protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55752: 100255-101937 , PASA_asmbl_55754: 102380-103980
cDNA
(Sanger)
(ID:Location)		 008_H23.ab1: 100387-101872 , 016_E18.ab1: 100368-101869 , 021_K10.ab1: 100386-101872 , 030_H20.ab1: 100284-101872 , 032_C10.ab1: 100257-101872 , 032_O09.ab1: 100257-101872 , 035_G02.ab1: 100257-101869 , 037_C05.ab1: 100364-101872

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_070 0.0 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_006973_060 0.1318315688 - - Uncharacterized protein TCM_038475 [Theobroma cacao]
3 Hb_000105_110 0.1926534613 - - hypothetical protein, partial [Fervidibacteria bacterium SCGC AAA471-D06]
4 Hb_000302_070 0.1944883119 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
5 Hb_184109_010 0.2149225841 - - PREDICTED: transcription factor WER-like [Jatropha curcas]
6 Hb_000866_350 0.230265964 - - -
7 Hb_168241_010 0.2302743723 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
8 Hb_007017_050 0.239188479 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000362_140 0.241153461 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 61-like [Jatropha curcas]
10 Hb_005601_030 0.2509628194 - - organic anion transporter, putative [Ricinus communis]
11 Hb_115832_010 0.254641998 - - transcription factor, putative [Ricinus communis]
12 Hb_011063_040 0.2698877695 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
13 Hb_130222_010 0.2722361853 - - hypothetical protein RCOM_1272620 [Ricinus communis]
14 Hb_001301_140 0.2729192081 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
15 Hb_001246_040 0.2757624559 - - hypothetical protein JCGZ_14673 [Jatropha curcas]
16 Hb_001318_160 0.2759937681 - - Polygalacturonase precursor, putative [Ricinus communis]
17 Hb_002851_040 0.2776119381 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
18 Hb_007617_040 0.282180097 - - PREDICTED: syntaxin-112-like [Jatropha curcas]
19 Hb_071379_010 0.2857571924 - - PREDICTED: mitogen-activated protein kinase kinase kinase 3-like [Nelumbo nucifera]
20 Hb_002343_030 0.2872284585 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000723_070 Hb_000723_070 Hb_006973_060 Hb_006973_060 Hb_000723_070--Hb_006973_060 Hb_000105_110 Hb_000105_110 Hb_000723_070--Hb_000105_110 Hb_000302_070 Hb_000302_070 Hb_000723_070--Hb_000302_070 Hb_184109_010 Hb_184109_010 Hb_000723_070--Hb_184109_010 Hb_000866_350 Hb_000866_350 Hb_000723_070--Hb_000866_350 Hb_168241_010 Hb_168241_010 Hb_000723_070--Hb_168241_010 Hb_006973_060--Hb_000302_070 Hb_071379_010 Hb_071379_010 Hb_006973_060--Hb_071379_010 Hb_006973_060--Hb_000105_110 Hb_006973_060--Hb_184109_010 Hb_006973_060--Hb_000866_350 Hb_002343_030 Hb_002343_030 Hb_000105_110--Hb_002343_030 Hb_000105_110--Hb_000302_070 Hb_093385_010 Hb_093385_010 Hb_000105_110--Hb_093385_010 Hb_005601_030 Hb_005601_030 Hb_000105_110--Hb_005601_030 Hb_007617_040 Hb_007617_040 Hb_000105_110--Hb_007617_040 Hb_000302_070--Hb_005601_030 Hb_000302_070--Hb_093385_010 Hb_000302_070--Hb_002343_030 Hb_184109_010--Hb_168241_010 Hb_184109_010--Hb_000866_350 Hb_007017_050 Hb_007017_050 Hb_184109_010--Hb_007017_050 Hb_011063_040 Hb_011063_040 Hb_184109_010--Hb_011063_040 Hb_001318_160 Hb_001318_160 Hb_184109_010--Hb_001318_160 Hb_004994_270 Hb_004994_270 Hb_184109_010--Hb_004994_270 Hb_000866_350--Hb_168241_010 Hb_000866_350--Hb_007017_050 Hb_000866_350--Hb_001318_160 Hb_000866_350--Hb_011063_040 Hb_000896_130 Hb_000896_130 Hb_000866_350--Hb_000896_130 Hb_168241_010--Hb_007017_050 Hb_071116_010 Hb_071116_010 Hb_168241_010--Hb_071116_010 Hb_000556_030 Hb_000556_030 Hb_168241_010--Hb_000556_030 Hb_000053_140 Hb_000053_140 Hb_168241_010--Hb_000053_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.025655 0 0.156375 0.0836297 0.0240554 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis