Hb_071379_010

Information

Type -
Description -
Location Contig71379: 1863-2610
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13360g
description POPTRDRAFT_876512; hypothetical protein
nr
ID XP_010273708.1
description PREDICTED: mitogen-activated protein kinase kinase kinase 3-like [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID B9HR94
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13360g PE=4 SV=2
Gene Ontology
ID GO:0016772
description mitogen-activated protein kinase kinase kinase npk1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071379_010 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase 3-like [Nelumbo nucifera]
2 Hb_006973_060 0.2185615867 - - Uncharacterized protein TCM_038475 [Theobroma cacao]
3 Hb_000189_060 0.2479012236 - - PREDICTED: uncharacterized protein LOC105637477 [Jatropha curcas]
4 Hb_000513_080 0.2516423375 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 43 [Jatropha curcas]
5 Hb_059301_010 0.2647812187 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
6 Hb_000723_070 0.2857571924 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_045481_010 0.2992167882 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
8 Hb_000302_070 0.3062326644 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
9 Hb_001138_030 0.3115116544 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
10 Hb_104812_020 0.3227574412 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
11 Hb_003740_010 0.3289656749 - - conserved hypothetical protein [Ricinus communis]
12 Hb_188411_010 0.3336046183 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
13 Hb_000413_150 0.3338462963 - - PREDICTED: uncharacterized protein LOC103709996 [Phoenix dactylifera]
14 Hb_120820_010 0.3375451985 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
15 Hb_005743_090 0.3407900958 - - -
16 Hb_011485_080 0.340853643 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
17 Hb_002627_070 0.3408813336 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002843_090 0.3415984984 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
19 Hb_014919_020 0.3441567875 - - -
20 Hb_019181_020 0.3467915151 - - PREDICTED: uncharacterized protein LOC105763068 [Gossypium raimondii]

Gene co-expression network

sample Hb_071379_010 Hb_071379_010 Hb_006973_060 Hb_006973_060 Hb_071379_010--Hb_006973_060 Hb_000189_060 Hb_000189_060 Hb_071379_010--Hb_000189_060 Hb_000513_080 Hb_000513_080 Hb_071379_010--Hb_000513_080 Hb_059301_010 Hb_059301_010 Hb_071379_010--Hb_059301_010 Hb_000723_070 Hb_000723_070 Hb_071379_010--Hb_000723_070 Hb_045481_010 Hb_045481_010 Hb_071379_010--Hb_045481_010 Hb_006973_060--Hb_000723_070 Hb_000302_070 Hb_000302_070 Hb_006973_060--Hb_000302_070 Hb_000105_110 Hb_000105_110 Hb_006973_060--Hb_000105_110 Hb_184109_010 Hb_184109_010 Hb_006973_060--Hb_184109_010 Hb_000866_350 Hb_000866_350 Hb_006973_060--Hb_000866_350 Hb_000189_060--Hb_000513_080 Hb_004640_040 Hb_004640_040 Hb_000189_060--Hb_004640_040 Hb_134312_010 Hb_134312_010 Hb_000189_060--Hb_134312_010 Hb_087008_010 Hb_087008_010 Hb_000189_060--Hb_087008_010 Hb_005743_090 Hb_005743_090 Hb_000189_060--Hb_005743_090 Hb_000513_080--Hb_087008_010 Hb_000513_080--Hb_004640_040 Hb_000513_080--Hb_134312_010 Hb_000123_100 Hb_000123_100 Hb_000513_080--Hb_000123_100 Hb_059301_010--Hb_045481_010 Hb_014919_020 Hb_014919_020 Hb_059301_010--Hb_014919_020 Hb_003740_010 Hb_003740_010 Hb_059301_010--Hb_003740_010 Hb_000816_010 Hb_000816_010 Hb_059301_010--Hb_000816_010 Hb_059301_010--Hb_000123_100 Hb_160233_020 Hb_160233_020 Hb_059301_010--Hb_160233_020 Hb_000723_070--Hb_000105_110 Hb_000723_070--Hb_000302_070 Hb_000723_070--Hb_184109_010 Hb_000723_070--Hb_000866_350 Hb_168241_010 Hb_168241_010 Hb_000723_070--Hb_168241_010 Hb_001138_030 Hb_001138_030 Hb_045481_010--Hb_001138_030 Hb_129459_010 Hb_129459_010 Hb_045481_010--Hb_129459_010 Hb_000003_140 Hb_000003_140 Hb_045481_010--Hb_000003_140 Hb_045481_010--Hb_000816_010 Hb_167508_010 Hb_167508_010 Hb_045481_010--Hb_167508_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110003 0 0.189747 0.0496823 0.0909684 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis