Hb_000189_060

Information

Type -
Description -
Location Contig189: 86325-89450
Sequence    

Annotation

kegg
ID tcc:TCM_036817
description Centromere protein O
nr
ID XP_012076338.1
description PREDICTED: uncharacterized protein LOC105637477 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KB43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07017 PE=4 SV=1
Gene Ontology
ID GO:0009987
description centromere protein o isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_060 0.0 - - PREDICTED: uncharacterized protein LOC105637477 [Jatropha curcas]
2 Hb_000513_080 0.0545548477 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 43 [Jatropha curcas]
3 Hb_004640_040 0.2167238375 - - -
4 Hb_134312_010 0.2216435379 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
5 Hb_087008_010 0.2248381897 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
6 Hb_071379_010 0.2479012236 - - PREDICTED: mitogen-activated protein kinase kinase kinase 3-like [Nelumbo nucifera]
7 Hb_005743_090 0.2708600106 - - -
8 Hb_000123_100 0.2715275796 - - Uncharacterized protein TCM_024608 [Theobroma cacao]
9 Hb_059301_010 0.2973933392 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
10 Hb_167364_020 0.309536539 - - -
11 Hb_109358_010 0.3204046529 - - -
12 Hb_045481_010 0.3239160679 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
13 Hb_000866_360 0.3253019305 - - -
14 Hb_028848_030 0.3302952575 - - -
15 Hb_104812_020 0.3489152836 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
16 Hb_004524_070 0.3750190492 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
17 Hb_113823_010 0.3861691112 - - -
18 Hb_000003_140 0.3918456447 - - hypothetical protein glysoja_047034, partial [Glycine soja]
19 Hb_001184_120 0.3964192954 - - hypothetical protein CICLE_v10025281mg [Citrus clementina]
20 Hb_001433_060 0.3965017049 - - hypothetical protein JCGZ_23291 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_060 Hb_000189_060 Hb_000513_080 Hb_000513_080 Hb_000189_060--Hb_000513_080 Hb_004640_040 Hb_004640_040 Hb_000189_060--Hb_004640_040 Hb_134312_010 Hb_134312_010 Hb_000189_060--Hb_134312_010 Hb_087008_010 Hb_087008_010 Hb_000189_060--Hb_087008_010 Hb_071379_010 Hb_071379_010 Hb_000189_060--Hb_071379_010 Hb_005743_090 Hb_005743_090 Hb_000189_060--Hb_005743_090 Hb_000513_080--Hb_087008_010 Hb_000513_080--Hb_004640_040 Hb_000513_080--Hb_134312_010 Hb_000513_080--Hb_071379_010 Hb_000123_100 Hb_000123_100 Hb_000513_080--Hb_000123_100 Hb_004640_040--Hb_134312_010 Hb_004640_040--Hb_087008_010 Hb_004640_040--Hb_000123_100 Hb_005892_070 Hb_005892_070 Hb_004640_040--Hb_005892_070 Hb_134312_010--Hb_087008_010 Hb_134312_010--Hb_000123_100 Hb_134312_010--Hb_005892_070 Hb_087008_010--Hb_005892_070 Hb_087008_010--Hb_000123_100 Hb_006973_060 Hb_006973_060 Hb_071379_010--Hb_006973_060 Hb_059301_010 Hb_059301_010 Hb_071379_010--Hb_059301_010 Hb_000723_070 Hb_000723_070 Hb_071379_010--Hb_000723_070 Hb_045481_010 Hb_045481_010 Hb_071379_010--Hb_045481_010 Hb_000866_360 Hb_000866_360 Hb_005743_090--Hb_000866_360 Hb_167364_020 Hb_167364_020 Hb_005743_090--Hb_167364_020 Hb_109358_010 Hb_109358_010 Hb_005743_090--Hb_109358_010 Hb_000111_410 Hb_000111_410 Hb_005743_090--Hb_000111_410 Hb_005743_090--Hb_000513_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.134812 0 0.20913 0 0.136153 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis