Hb_000111_410

Information

Type -
Description -
Location Contig111: 383183-383458
Sequence    

Annotation

kegg
ID rcu:RCOM_1264320
description hypothetical protein
nr
ID XP_002529983.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O22227
description Protein MIZU-KUSSEI 1 OS=Arabidopsis thaliana GN=MIZ1 PE=1 SV=1
trembl
ID B9SVG4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1264320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03418: 377656-382226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_410 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_044662_050 0.2482298057 - - hypothetical protein POPTR_0002s08440g [Populus trichocarpa]
3 Hb_002641_040 0.2775436994 - - class III peroxidase [Populus trichocarpa]
4 Hb_005743_090 0.2830812823 - - -
5 Hb_000653_020 0.2832328577 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
6 Hb_000866_360 0.2840113429 - - -
7 Hb_036790_030 0.2866346013 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
8 Hb_000349_190 0.2901545713 transcription factor TF Family: GRF hypothetical protein POPTR_0001s08310g [Populus trichocarpa]
9 Hb_005686_100 0.2918919076 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004129_080 0.2921978664 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
11 Hb_001279_050 0.2927111471 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
12 Hb_000321_080 0.2945292238 - - histone H4 [Zea mays]
13 Hb_004586_310 0.2949587083 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001507_080 0.2949791659 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
15 Hb_000497_240 0.2983909709 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
16 Hb_005694_070 0.2986713223 - - kinase, putative [Ricinus communis]
17 Hb_114292_010 0.2991957448 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001329_170 0.3015036952 - - Chlorophyll a-b binding protein, chloroplastic [Aegilops tauschii]
19 Hb_000739_270 0.3027605415 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
20 Hb_000431_090 0.3029274902 - - hypothetical protein POPTR_0017s14020g [Populus trichocarpa]

Gene co-expression network

sample Hb_000111_410 Hb_000111_410 Hb_044662_050 Hb_044662_050 Hb_000111_410--Hb_044662_050 Hb_002641_040 Hb_002641_040 Hb_000111_410--Hb_002641_040 Hb_005743_090 Hb_005743_090 Hb_000111_410--Hb_005743_090 Hb_000653_020 Hb_000653_020 Hb_000111_410--Hb_000653_020 Hb_000866_360 Hb_000866_360 Hb_000111_410--Hb_000866_360 Hb_036790_030 Hb_036790_030 Hb_000111_410--Hb_036790_030 Hb_000321_080 Hb_000321_080 Hb_044662_050--Hb_000321_080 Hb_002007_040 Hb_002007_040 Hb_044662_050--Hb_002007_040 Hb_002221_010 Hb_002221_010 Hb_044662_050--Hb_002221_010 Hb_004449_140 Hb_004449_140 Hb_044662_050--Hb_004449_140 Hb_044662_050--Hb_000653_020 Hb_002007_280 Hb_002007_280 Hb_044662_050--Hb_002007_280 Hb_002641_040--Hb_044662_050 Hb_000264_120 Hb_000264_120 Hb_002641_040--Hb_000264_120 Hb_007002_050 Hb_007002_050 Hb_002641_040--Hb_007002_050 Hb_000679_120 Hb_000679_120 Hb_002641_040--Hb_000679_120 Hb_002641_040--Hb_000321_080 Hb_002641_040--Hb_002007_040 Hb_005743_090--Hb_000866_360 Hb_167364_020 Hb_167364_020 Hb_005743_090--Hb_167364_020 Hb_000189_060 Hb_000189_060 Hb_005743_090--Hb_000189_060 Hb_109358_010 Hb_109358_010 Hb_005743_090--Hb_109358_010 Hb_000513_080 Hb_000513_080 Hb_005743_090--Hb_000513_080 Hb_013016_010 Hb_013016_010 Hb_000653_020--Hb_013016_010 Hb_074792_010 Hb_074792_010 Hb_000653_020--Hb_074792_010 Hb_000347_140 Hb_000347_140 Hb_000653_020--Hb_000347_140 Hb_028487_120 Hb_028487_120 Hb_000653_020--Hb_028487_120 Hb_000653_020--Hb_004449_140 Hb_000866_360--Hb_109358_010 Hb_000866_360--Hb_167364_020 Hb_000866_360--Hb_000189_060 Hb_023226_050 Hb_023226_050 Hb_000866_360--Hb_023226_050 Hb_010998_050 Hb_010998_050 Hb_036790_030--Hb_010998_050 Hb_000345_130 Hb_000345_130 Hb_036790_030--Hb_000345_130 Hb_002307_020 Hb_002307_020 Hb_036790_030--Hb_002307_020 Hb_000739_270 Hb_000739_270 Hb_036790_030--Hb_000739_270 Hb_036790_030--Hb_002007_040 Hb_000349_230 Hb_000349_230 Hb_036790_030--Hb_000349_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.880632 0.38756 10.3293 0.699809 1.33113 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.466786 1.10584 0 0 0

CAGE analysis