Hb_109358_010

Information

Type -
Description -
Location Contig109358: 880-1245
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_109358_010 0.0 - - -
2 Hb_000680_040 0.1576014521 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
3 Hb_004241_220 0.1727821219 - - -
4 Hb_094730_010 0.192257543 - - hypothetical protein JCGZ_04374 [Jatropha curcas]
5 Hb_001433_060 0.2028827442 - - hypothetical protein JCGZ_23291 [Jatropha curcas]
6 Hb_001184_120 0.2047775327 - - hypothetical protein CICLE_v10025281mg [Citrus clementina]
7 Hb_000866_360 0.2636339867 - - -
8 Hb_023226_050 0.2682960824 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
9 Hb_005743_090 0.2721205738 - - -
10 Hb_000375_270 0.2880457182 - - -
11 Hb_003549_060 0.3042393677 - - PREDICTED: importin subunit alpha-1a-like isoform X3 [Gossypium raimondii]
12 Hb_000156_170 0.3089825761 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Prunus mume]
13 Hb_000200_260 0.3179387513 - - PREDICTED: uncharacterized protein LOC104232531 isoform X2 [Nicotiana sylvestris]
14 Hb_000189_060 0.3204046529 - - PREDICTED: uncharacterized protein LOC105637477 [Jatropha curcas]
15 Hb_000212_340 0.3212511219 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008014_080 0.3221847055 - - PREDICTED: uncharacterized protein LOC103848614 [Brassica rapa]
17 Hb_072639_010 0.3231222471 - - JHL22C18.10 [Jatropha curcas]
18 Hb_000053_090 0.3232695923 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Populus euphratica]
19 Hb_000445_340 0.3265606215 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000111_410 0.330821009 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_109358_010 Hb_109358_010 Hb_000680_040 Hb_000680_040 Hb_109358_010--Hb_000680_040 Hb_004241_220 Hb_004241_220 Hb_109358_010--Hb_004241_220 Hb_094730_010 Hb_094730_010 Hb_109358_010--Hb_094730_010 Hb_001433_060 Hb_001433_060 Hb_109358_010--Hb_001433_060 Hb_001184_120 Hb_001184_120 Hb_109358_010--Hb_001184_120 Hb_000866_360 Hb_000866_360 Hb_109358_010--Hb_000866_360 Hb_000680_040--Hb_001433_060 Hb_000680_040--Hb_001184_120 Hb_000680_040--Hb_004241_220 Hb_000680_040--Hb_094730_010 Hb_000200_260 Hb_000200_260 Hb_000680_040--Hb_000200_260 Hb_004241_220--Hb_094730_010 Hb_000375_270 Hb_000375_270 Hb_004241_220--Hb_000375_270 Hb_003549_060 Hb_003549_060 Hb_004241_220--Hb_003549_060 Hb_004241_220--Hb_001433_060 Hb_094730_010--Hb_000375_270 Hb_094730_010--Hb_003549_060 Hb_148146_030 Hb_148146_030 Hb_094730_010--Hb_148146_030 Hb_001433_060--Hb_001184_120 Hb_001433_060--Hb_000200_260 Hb_000212_340 Hb_000212_340 Hb_001433_060--Hb_000212_340 Hb_008014_080 Hb_008014_080 Hb_001433_060--Hb_008014_080 Hb_072639_010 Hb_072639_010 Hb_001433_060--Hb_072639_010 Hb_001184_120--Hb_000200_260 Hb_001184_120--Hb_000212_340 Hb_001184_120--Hb_008014_080 Hb_001184_120--Hb_072639_010 Hb_005743_090 Hb_005743_090 Hb_000866_360--Hb_005743_090 Hb_000111_410 Hb_000111_410 Hb_000866_360--Hb_000111_410 Hb_167364_020 Hb_167364_020 Hb_000866_360--Hb_167364_020 Hb_000189_060 Hb_000189_060 Hb_000866_360--Hb_000189_060 Hb_023226_050 Hb_023226_050 Hb_000866_360--Hb_023226_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.97444 0 85.6827 0 24.9534 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis