Hb_003549_060

Information

Type -
Description -
Location Contig3549: 51490-54463
Sequence    

Annotation

kegg
ID tet:TTHERM_00621200
description Armadillo/beta-catenin repeat family protein
nr
ID XP_012458667.1
description PREDICTED: importin subunit alpha-1a-like isoform X3 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2NJ81
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G074100 PE=4 SV=1
Gene Ontology
ID GO:0006811
description importin subunit alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003549_060 0.0 - - PREDICTED: importin subunit alpha-1a-like isoform X3 [Gossypium raimondii]
2 Hb_000375_270 0.1408690796 - - -
3 Hb_003398_110 0.1474253591 - - PREDICTED: uncharacterized protein LOC105647583 [Jatropha curcas]
4 Hb_000129_060 0.1487767715 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
5 Hb_004019_130 0.1488000273 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
6 Hb_162008_030 0.1499702745 - - cytochrome p450 [Ageratina adenophora]
7 Hb_001546_100 0.15328227 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
8 Hb_029879_040 0.1538195284 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
9 Hb_002028_230 0.1540352468 - - Pectinesterase-3 precursor, putative [Ricinus communis]
10 Hb_002030_140 0.1548286427 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
11 Hb_149407_010 0.1548991431 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
12 Hb_022929_010 0.15522896 - - zinc/iron transporter, putative [Ricinus communis]
13 Hb_000680_080 0.1553676357 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
14 Hb_012573_060 0.1565224751 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
15 Hb_121680_010 0.1570038434 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
16 Hb_000077_430 0.1593091657 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
17 Hb_000212_170 0.1605885475 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
18 Hb_162008_040 0.161705282 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
19 Hb_078641_020 0.1629436688 - - Pectinesterase-2 precursor, putative [Ricinus communis]
20 Hb_007157_050 0.1640800968 - - hypothetical protein RCOM_0711500 [Ricinus communis]

Gene co-expression network

sample Hb_003549_060 Hb_003549_060 Hb_000375_270 Hb_000375_270 Hb_003549_060--Hb_000375_270 Hb_003398_110 Hb_003398_110 Hb_003549_060--Hb_003398_110 Hb_000129_060 Hb_000129_060 Hb_003549_060--Hb_000129_060 Hb_004019_130 Hb_004019_130 Hb_003549_060--Hb_004019_130 Hb_162008_030 Hb_162008_030 Hb_003549_060--Hb_162008_030 Hb_001546_100 Hb_001546_100 Hb_003549_060--Hb_001546_100 Hb_094730_010 Hb_094730_010 Hb_000375_270--Hb_094730_010 Hb_000006_020 Hb_000006_020 Hb_000375_270--Hb_000006_020 Hb_000015_240 Hb_000015_240 Hb_000375_270--Hb_000015_240 Hb_000016_090 Hb_000016_090 Hb_000375_270--Hb_000016_090 Hb_000016_240 Hb_000016_240 Hb_000375_270--Hb_000016_240 Hb_000028_020 Hb_000028_020 Hb_000375_270--Hb_000028_020 Hb_121680_010 Hb_121680_010 Hb_003398_110--Hb_121680_010 Hb_162008_020 Hb_162008_020 Hb_003398_110--Hb_162008_020 Hb_008252_010 Hb_008252_010 Hb_003398_110--Hb_008252_010 Hb_000190_200 Hb_000190_200 Hb_003398_110--Hb_000190_200 Hb_007157_050 Hb_007157_050 Hb_003398_110--Hb_007157_050 Hb_003398_110--Hb_162008_030 Hb_000129_060--Hb_004019_130 Hb_000129_060--Hb_162008_030 Hb_029879_040 Hb_029879_040 Hb_000129_060--Hb_029879_040 Hb_000129_060--Hb_001546_100 Hb_002028_230 Hb_002028_230 Hb_000129_060--Hb_002028_230 Hb_149407_010 Hb_149407_010 Hb_000129_060--Hb_149407_010 Hb_004019_130--Hb_162008_030 Hb_004019_130--Hb_001546_100 Hb_002030_140 Hb_002030_140 Hb_004019_130--Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_004019_130--Hb_022929_010 Hb_004019_130--Hb_029879_040 Hb_162008_030--Hb_149407_010 Hb_162008_030--Hb_029879_040 Hb_162008_030--Hb_002028_230 Hb_162008_030--Hb_001546_100 Hb_001546_100--Hb_002030_140 Hb_001546_100--Hb_022929_010 Hb_000680_080 Hb_000680_080 Hb_001546_100--Hb_000680_080 Hb_012573_060 Hb_012573_060 Hb_001546_100--Hb_012573_060 Hb_000077_430 Hb_000077_430 Hb_001546_100--Hb_000077_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.352819 0.0147739 0.0167414 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis