Hb_000680_040

Information

Type transcription factor
Description TF Family: LOB
Location Contig680: 25513-26458
Sequence    

Annotation

kegg
ID rcu:RCOM_0311750
description LOB domain-containing protein, putative
nr
ID XP_002527399.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9LRW1
description LOB domain-containing protein 22 OS=Arabidopsis thaliana GN=LBD22 PE=2 SV=1
trembl
ID B9SN30
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0311750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53737: 23619-24590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_040 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_001433_060 0.0856567942 - - hypothetical protein JCGZ_23291 [Jatropha curcas]
3 Hb_001184_120 0.0884582944 - - hypothetical protein CICLE_v10025281mg [Citrus clementina]
4 Hb_004241_220 0.1451269349 - - -
5 Hb_109358_010 0.1576014521 - - -
6 Hb_094730_010 0.1785315168 - - hypothetical protein JCGZ_04374 [Jatropha curcas]
7 Hb_000200_260 0.2310714032 - - PREDICTED: uncharacterized protein LOC104232531 isoform X2 [Nicotiana sylvestris]
8 Hb_000212_340 0.2348904837 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008014_080 0.2359650093 - - PREDICTED: uncharacterized protein LOC103848614 [Brassica rapa]
10 Hb_072639_010 0.2370432787 - - JHL22C18.10 [Jatropha curcas]
11 Hb_000053_090 0.2372126675 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Populus euphratica]
12 Hb_000445_340 0.2409909449 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003866_010 0.2496026417 - - Polyprotein, putative [Solanum demissum]
14 Hb_000156_170 0.2942967926 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Prunus mume]
15 Hb_000375_270 0.3008642741 - - -
16 Hb_003492_030 0.301480196 - - -
17 Hb_003549_060 0.3138087058 - - PREDICTED: importin subunit alpha-1a-like isoform X3 [Gossypium raimondii]
18 Hb_001638_100 0.3293339469 - - PREDICTED: probable protein S-acyltransferase 12 [Vitis vinifera]
19 Hb_000163_120 0.331094341 - - -
20 Hb_001825_050 0.3369684826 - - -

Gene co-expression network

sample Hb_000680_040 Hb_000680_040 Hb_001433_060 Hb_001433_060 Hb_000680_040--Hb_001433_060 Hb_001184_120 Hb_001184_120 Hb_000680_040--Hb_001184_120 Hb_004241_220 Hb_004241_220 Hb_000680_040--Hb_004241_220 Hb_109358_010 Hb_109358_010 Hb_000680_040--Hb_109358_010 Hb_094730_010 Hb_094730_010 Hb_000680_040--Hb_094730_010 Hb_000200_260 Hb_000200_260 Hb_000680_040--Hb_000200_260 Hb_001433_060--Hb_001184_120 Hb_001433_060--Hb_000200_260 Hb_000212_340 Hb_000212_340 Hb_001433_060--Hb_000212_340 Hb_008014_080 Hb_008014_080 Hb_001433_060--Hb_008014_080 Hb_072639_010 Hb_072639_010 Hb_001433_060--Hb_072639_010 Hb_001184_120--Hb_000200_260 Hb_001184_120--Hb_000212_340 Hb_001184_120--Hb_008014_080 Hb_001184_120--Hb_072639_010 Hb_004241_220--Hb_094730_010 Hb_000375_270 Hb_000375_270 Hb_004241_220--Hb_000375_270 Hb_004241_220--Hb_109358_010 Hb_003549_060 Hb_003549_060 Hb_004241_220--Hb_003549_060 Hb_004241_220--Hb_001433_060 Hb_109358_010--Hb_094730_010 Hb_109358_010--Hb_001433_060 Hb_109358_010--Hb_001184_120 Hb_000866_360 Hb_000866_360 Hb_109358_010--Hb_000866_360 Hb_094730_010--Hb_000375_270 Hb_094730_010--Hb_003549_060 Hb_148146_030 Hb_148146_030 Hb_094730_010--Hb_148146_030 Hb_000200_260--Hb_000212_340 Hb_000200_260--Hb_008014_080 Hb_000200_260--Hb_072639_010 Hb_000053_090 Hb_000053_090 Hb_000200_260--Hb_000053_090 Hb_000445_340 Hb_000445_340 Hb_000200_260--Hb_000445_340 Hb_003866_010 Hb_003866_010 Hb_000200_260--Hb_003866_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0628274 0 0.0246899 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis