Hb_003866_010

Information

Type -
Description -
Location Contig3866: 73-1819
Sequence    

Annotation

kegg
ID atr:s02760p00000080
description AMTR_s02760p00000080; hypothetical protein
nr
ID AAT38747.2
description Polyprotein, putative [Solanum demissum]
swissprot
ID -
description -
trembl
ID Q6L3Q0
description Polyprotein, putative OS=Solanum demissum GN=SDM1_42t00018 PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003866_010 0.0 - - Polyprotein, putative [Solanum demissum]
2 Hb_000445_340 0.0087967104 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000053_090 0.0126520989 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Populus euphratica]
4 Hb_072639_010 0.0128248869 - - JHL22C18.10 [Jatropha curcas]
5 Hb_008014_080 0.0139246781 - - PREDICTED: uncharacterized protein LOC103848614 [Brassica rapa]
6 Hb_000212_340 0.0150204509 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000200_260 0.0189134349 - - PREDICTED: uncharacterized protein LOC104232531 isoform X2 [Nicotiana sylvestris]
8 Hb_003492_030 0.0532695446 - - -
9 Hb_000163_120 0.08389989 - - -
10 Hb_000465_200 0.118874416 - - PREDICTED: protein NSP-INTERACTING KINASE 1 [Jatropha curcas]
11 Hb_002001_040 0.1253476304 - - hypothetical protein CISIN_1g044945mg, partial [Citrus sinensis]
12 Hb_000207_410 0.1270844604 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000537_110 0.1278427521 - - -
14 Hb_001184_120 0.1624747211 - - hypothetical protein CICLE_v10025281mg [Citrus clementina]
15 Hb_001433_060 0.1652582716 - - hypothetical protein JCGZ_23291 [Jatropha curcas]
16 Hb_000680_040 0.2496026417 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
17 Hb_034589_010 0.3304284259 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
18 Hb_040948_020 0.3314562665 - - -
19 Hb_109358_010 0.3340924583 - - -
20 Hb_001825_050 0.3536621389 - - -

Gene co-expression network

sample Hb_003866_010 Hb_003866_010 Hb_000445_340 Hb_000445_340 Hb_003866_010--Hb_000445_340 Hb_000053_090 Hb_000053_090 Hb_003866_010--Hb_000053_090 Hb_072639_010 Hb_072639_010 Hb_003866_010--Hb_072639_010 Hb_008014_080 Hb_008014_080 Hb_003866_010--Hb_008014_080 Hb_000212_340 Hb_000212_340 Hb_003866_010--Hb_000212_340 Hb_000200_260 Hb_000200_260 Hb_003866_010--Hb_000200_260 Hb_000445_340--Hb_000053_090 Hb_000445_340--Hb_072639_010 Hb_000445_340--Hb_008014_080 Hb_000445_340--Hb_000212_340 Hb_000445_340--Hb_000200_260 Hb_000053_090--Hb_072639_010 Hb_000053_090--Hb_008014_080 Hb_000053_090--Hb_000212_340 Hb_000053_090--Hb_000200_260 Hb_072639_010--Hb_008014_080 Hb_072639_010--Hb_000212_340 Hb_072639_010--Hb_000200_260 Hb_008014_080--Hb_000212_340 Hb_008014_080--Hb_000200_260 Hb_000212_340--Hb_000200_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0272036 0 0.0361313 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis