Hb_000053_090

Information

Type -
Description -
Location Contig53: 172166-173441
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14120g
description POPTRDRAFT_769709; hypothetical protein
nr
ID XP_011008738.1
description PREDICTED: clavaminate synthase-like protein At3g21360 [Populus euphratica]
swissprot
ID Q9LIG0
description Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana GN=At3g21360 PE=1 SV=1
trembl
ID B9HWN2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14120g PE=4 SV=1
Gene Ontology
ID GO:0016491
description clavaminate synthase-like protein at3g21360

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000053_090 0.0 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Populus euphratica]
2 Hb_072639_010 0.000172798 - - JHL22C18.10 [Jatropha curcas]
3 Hb_008014_080 0.0012726592 - - PREDICTED: uncharacterized protein LOC103848614 [Brassica rapa]
4 Hb_000212_340 0.0023685125 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000445_340 0.0038555419 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000200_260 0.0062618695 - - PREDICTED: uncharacterized protein LOC104232531 isoform X2 [Nicotiana sylvestris]
7 Hb_003866_010 0.0126520989 - - Polyprotein, putative [Solanum demissum]
8 Hb_003492_030 0.065905305 - - -
9 Hb_000163_120 0.09651364 - - -
10 Hb_000465_200 0.1314508211 - - PREDICTED: protein NSP-INTERACTING KINASE 1 [Jatropha curcas]
11 Hb_002001_040 0.1379156123 - - hypothetical protein CISIN_1g044945mg, partial [Citrus sinensis]
12 Hb_000207_410 0.1396500989 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000537_110 0.1404073563 - - -
14 Hb_001184_120 0.1499294917 - - hypothetical protein CICLE_v10025281mg [Citrus clementina]
15 Hb_001433_060 0.1527168934 - - hypothetical protein JCGZ_23291 [Jatropha curcas]
16 Hb_000680_040 0.2372126675 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
17 Hb_109358_010 0.3232695923 - - -
18 Hb_040948_020 0.3292077339 - - -
19 Hb_034589_010 0.330223288 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
20 Hb_001825_050 0.3490336534 - - -

Gene co-expression network

sample Hb_000053_090 Hb_000053_090 Hb_072639_010 Hb_072639_010 Hb_000053_090--Hb_072639_010 Hb_008014_080 Hb_008014_080 Hb_000053_090--Hb_008014_080 Hb_000212_340 Hb_000212_340 Hb_000053_090--Hb_000212_340 Hb_000445_340 Hb_000445_340 Hb_000053_090--Hb_000445_340 Hb_000200_260 Hb_000200_260 Hb_000053_090--Hb_000200_260 Hb_003866_010 Hb_003866_010 Hb_000053_090--Hb_003866_010 Hb_072639_010--Hb_008014_080 Hb_072639_010--Hb_000212_340 Hb_072639_010--Hb_000445_340 Hb_072639_010--Hb_000200_260 Hb_072639_010--Hb_003866_010 Hb_008014_080--Hb_000212_340 Hb_008014_080--Hb_000200_260 Hb_008014_080--Hb_000445_340 Hb_008014_080--Hb_003866_010 Hb_000212_340--Hb_000200_260 Hb_000212_340--Hb_000445_340 Hb_000212_340--Hb_003866_010 Hb_000445_340--Hb_003866_010 Hb_000445_340--Hb_000200_260 Hb_000200_260--Hb_003866_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0173056 0 0.0216449 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis