Hb_001184_120

Information

Type -
Description -
Location Contig1184: 221063-223060
Sequence    

Annotation

kegg
ID cic:CICLE_v10025281mg
description hypothetical protein
nr
ID XP_006426492.1
description hypothetical protein CICLE_v10025281mg [Citrus clementina]
swissprot
ID Q9LV26
description Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=3 SV=2
trembl
ID V4SGL7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025281mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box lrr-repeat protein at4g00320-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001184_120 0.0 - - hypothetical protein CICLE_v10025281mg [Citrus clementina]
2 Hb_001433_060 0.0028104366 - - hypothetical protein JCGZ_23291 [Jatropha curcas]
3 Hb_000680_040 0.0884582944 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_000200_260 0.1437144148 - - PREDICTED: uncharacterized protein LOC104232531 isoform X2 [Nicotiana sylvestris]
5 Hb_000212_340 0.1475791522 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008014_080 0.148666669 - - PREDICTED: uncharacterized protein LOC103848614 [Brassica rapa]
7 Hb_072639_010 0.149758039 - - JHL22C18.10 [Jatropha curcas]
8 Hb_000053_090 0.1499294917 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Populus euphratica]
9 Hb_000445_340 0.1537542158 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003866_010 0.1624747211 - - Polyprotein, putative [Solanum demissum]
11 Hb_109358_010 0.2047775327 - - -
12 Hb_003492_030 0.2150945916 - - -
13 Hb_004241_220 0.2319543332 - - -
14 Hb_000163_120 0.2452003793 - - -
15 Hb_094730_010 0.2645930362 - - hypothetical protein JCGZ_04374 [Jatropha curcas]
16 Hb_000465_200 0.2794333583 - - PREDICTED: protein NSP-INTERACTING KINASE 1 [Jatropha curcas]
17 Hb_002001_040 0.2857519303 - - hypothetical protein CISIN_1g044945mg, partial [Citrus sinensis]
18 Hb_000207_410 0.2874463175 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000537_110 0.288185952 - - -
20 Hb_001825_050 0.3236772184 - - -

Gene co-expression network

sample Hb_001184_120 Hb_001184_120 Hb_001433_060 Hb_001433_060 Hb_001184_120--Hb_001433_060 Hb_000680_040 Hb_000680_040 Hb_001184_120--Hb_000680_040 Hb_000200_260 Hb_000200_260 Hb_001184_120--Hb_000200_260 Hb_000212_340 Hb_000212_340 Hb_001184_120--Hb_000212_340 Hb_008014_080 Hb_008014_080 Hb_001184_120--Hb_008014_080 Hb_072639_010 Hb_072639_010 Hb_001184_120--Hb_072639_010 Hb_001433_060--Hb_000680_040 Hb_001433_060--Hb_000200_260 Hb_001433_060--Hb_000212_340 Hb_001433_060--Hb_008014_080 Hb_001433_060--Hb_072639_010 Hb_004241_220 Hb_004241_220 Hb_000680_040--Hb_004241_220 Hb_109358_010 Hb_109358_010 Hb_000680_040--Hb_109358_010 Hb_094730_010 Hb_094730_010 Hb_000680_040--Hb_094730_010 Hb_000680_040--Hb_000200_260 Hb_000200_260--Hb_000212_340 Hb_000200_260--Hb_008014_080 Hb_000200_260--Hb_072639_010 Hb_000053_090 Hb_000053_090 Hb_000200_260--Hb_000053_090 Hb_000445_340 Hb_000445_340 Hb_000200_260--Hb_000445_340 Hb_003866_010 Hb_003866_010 Hb_000200_260--Hb_003866_010 Hb_000212_340--Hb_008014_080 Hb_000212_340--Hb_072639_010 Hb_000212_340--Hb_000053_090 Hb_000212_340--Hb_000445_340 Hb_000212_340--Hb_003866_010 Hb_008014_080--Hb_072639_010 Hb_008014_080--Hb_000053_090 Hb_008014_080--Hb_000445_340 Hb_008014_080--Hb_003866_010 Hb_072639_010--Hb_000053_090 Hb_072639_010--Hb_000445_340 Hb_072639_010--Hb_003866_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0192717 0 0.011812 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis