Hb_000264_120

Information

Type -
Description -
Location Contig264: 118975-120308
Sequence    

Annotation

kegg
ID rcu:RCOM_0935920
description Stem-specific protein TSJT1, putative
nr
ID XP_002519037.1
description Stem-specific protein TSJT1, putative [Ricinus communis]
swissprot
ID P24805
description Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1
trembl
ID B9RZ68
description Stem-specific protein TSJT1, putative OS=Ricinus communis GN=RCOM_0935920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27594: 118913-120268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_120 0.0 - - Stem-specific protein TSJT1, putative [Ricinus communis]
2 Hb_000349_190 0.217093314 transcription factor TF Family: GRF hypothetical protein POPTR_0001s08310g [Populus trichocarpa]
3 Hb_002641_040 0.2205971818 - - class III peroxidase [Populus trichocarpa]
4 Hb_004129_080 0.2317110521 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
5 Hb_000181_190 0.2618130052 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
6 Hb_089889_010 0.2641386961 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
7 Hb_004163_020 0.2655411162 - - -
8 Hb_010288_050 0.2658325026 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
9 Hb_000975_140 0.2712351692 - - lactoylglutathione lyase family protein [Populus trichocarpa]
10 Hb_001975_130 0.2722692077 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 6 isoform X1 [Populus euphratica]
11 Hb_004116_120 0.2742168389 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
12 Hb_005375_050 0.277033685 - - inorganic pyrophosphatase, putative [Ricinus communis]
13 Hb_044662_050 0.2780044564 - - hypothetical protein POPTR_0002s08440g [Populus trichocarpa]
14 Hb_114292_010 0.2812407669 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000261_530 0.2839707214 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
16 Hb_000165_270 0.2861540216 transcription factor TF Family: Tify JAZ10 [Hevea brasiliensis]
17 Hb_005162_120 0.2868590187 - - ferric reductase oxidase [Manihot esculenta]
18 Hb_002979_030 0.2873961847 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
19 Hb_002007_040 0.2875239531 - - unnamed protein product [Coffea canephora]
20 Hb_003399_100 0.28949286 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000264_120 Hb_000264_120 Hb_000349_190 Hb_000349_190 Hb_000264_120--Hb_000349_190 Hb_002641_040 Hb_002641_040 Hb_000264_120--Hb_002641_040 Hb_004129_080 Hb_004129_080 Hb_000264_120--Hb_004129_080 Hb_000181_190 Hb_000181_190 Hb_000264_120--Hb_000181_190 Hb_089889_010 Hb_089889_010 Hb_000264_120--Hb_089889_010 Hb_004163_020 Hb_004163_020 Hb_000264_120--Hb_004163_020 Hb_000349_190--Hb_004163_020 Hb_000349_190--Hb_004129_080 Hb_000975_140 Hb_000975_140 Hb_000349_190--Hb_000975_140 Hb_001246_050 Hb_001246_050 Hb_000349_190--Hb_001246_050 Hb_000042_040 Hb_000042_040 Hb_000349_190--Hb_000042_040 Hb_044662_050 Hb_044662_050 Hb_002641_040--Hb_044662_050 Hb_007002_050 Hb_007002_050 Hb_002641_040--Hb_007002_050 Hb_000679_120 Hb_000679_120 Hb_002641_040--Hb_000679_120 Hb_000321_080 Hb_000321_080 Hb_002641_040--Hb_000321_080 Hb_002007_040 Hb_002007_040 Hb_002641_040--Hb_002007_040 Hb_002639_170 Hb_002639_170 Hb_004129_080--Hb_002639_170 Hb_004586_310 Hb_004586_310 Hb_004129_080--Hb_004586_310 Hb_114292_010 Hb_114292_010 Hb_004129_080--Hb_114292_010 Hb_004129_080--Hb_000975_140 Hb_005375_050 Hb_005375_050 Hb_000181_190--Hb_005375_050 Hb_000181_190--Hb_000349_190 Hb_036790_030 Hb_036790_030 Hb_000181_190--Hb_036790_030 Hb_004116_100 Hb_004116_100 Hb_000181_190--Hb_004116_100 Hb_002307_020 Hb_002307_020 Hb_000181_190--Hb_002307_020 Hb_003399_100 Hb_003399_100 Hb_089889_010--Hb_003399_100 Hb_002045_190 Hb_002045_190 Hb_089889_010--Hb_002045_190 Hb_001975_130 Hb_001975_130 Hb_089889_010--Hb_001975_130 Hb_089889_010--Hb_005375_050 Hb_001890_020 Hb_001890_020 Hb_089889_010--Hb_001890_020 Hb_030627_070 Hb_030627_070 Hb_089889_010--Hb_030627_070 Hb_004163_020--Hb_000042_040 Hb_000111_400 Hb_000111_400 Hb_004163_020--Hb_000111_400 Hb_004163_020--Hb_001246_050 Hb_107429_010 Hb_107429_010 Hb_004163_020--Hb_107429_010 Hb_000175_150 Hb_000175_150 Hb_004163_020--Hb_000175_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.59619 3.59666 220.935 15.6837 0 0.0226117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.37704 45.5573 18.802 3.09745 0.537954

CAGE analysis