Hb_000975_140

Information

Type -
Description -
Location Contig975: 87486-88082
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24420g
description POPTRDRAFT_841812; lactoylglutathione lyase family protein
nr
ID XP_002299885.1
description lactoylglutathione lyase family protein [Populus trichocarpa]
swissprot
ID O07918
description Uncharacterized protein YraH OS=Bacillus subtilis (strain 168) GN=yraH PE=3 SV=1
trembl
ID B9GEQ8
description Lactoylglutathione lyase family protein OS=Populus trichocarpa GN=POPTR_0001s24420g PE=4 SV=1
Gene Ontology
ID GO:0016829
description dessication-induced 1voc superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_140 0.0 - - lactoylglutathione lyase family protein [Populus trichocarpa]
2 Hb_000042_040 0.1835599585 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
3 Hb_000347_160 0.201007776 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
4 Hb_087793_010 0.201490796 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000107_670 0.2071128487 transcription factor TF Family: MIKC floral homeotic protein AGAMOUS [Jatropha curcas]
6 Hb_114292_010 0.2145024988 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004449_160 0.2212918815 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000028_240 0.2276200529 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000349_190 0.2315659122 transcription factor TF Family: GRF hypothetical protein POPTR_0001s08310g [Populus trichocarpa]
10 Hb_171646_010 0.2330360473 - - hypothetical protein B456_012G144300, partial [Gossypium raimondii]
11 Hb_000069_390 0.2339170148 - - PREDICTED: probable F-box protein At3g61730 [Jatropha curcas]
12 Hb_000367_240 0.2347037534 - - hypothetical protein JCGZ_11682 [Jatropha curcas]
13 Hb_002078_310 0.2362943174 - - PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]
14 Hb_000574_520 0.2373785991 - - PREDICTED: uncharacterized protein LOC105634842 isoform X1 [Jatropha curcas]
15 Hb_000165_270 0.2375599158 transcription factor TF Family: Tify JAZ10 [Hevea brasiliensis]
16 Hb_001433_120 0.2384016924 - - hypothetical protein CICLE_v10003574mg, partial [Citrus clementina]
17 Hb_010288_050 0.2384688358 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
18 Hb_007416_380 0.24007704 - - PREDICTED: fasciclin-like arabinogalactan protein 3 [Jatropha curcas]
19 Hb_000429_210 0.2401635204 transcription factor TF Family: ERF hypothetical protein RCOM_0089590 [Ricinus communis]
20 Hb_002979_030 0.2420828293 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000975_140 Hb_000975_140 Hb_000042_040 Hb_000042_040 Hb_000975_140--Hb_000042_040 Hb_000347_160 Hb_000347_160 Hb_000975_140--Hb_000347_160 Hb_087793_010 Hb_087793_010 Hb_000975_140--Hb_087793_010 Hb_000107_670 Hb_000107_670 Hb_000975_140--Hb_000107_670 Hb_114292_010 Hb_114292_010 Hb_000975_140--Hb_114292_010 Hb_004449_160 Hb_004449_160 Hb_000975_140--Hb_004449_160 Hb_000753_220 Hb_000753_220 Hb_000042_040--Hb_000753_220 Hb_002585_050 Hb_002585_050 Hb_000042_040--Hb_002585_050 Hb_000592_150 Hb_000592_150 Hb_000042_040--Hb_000592_150 Hb_004228_050 Hb_004228_050 Hb_000042_040--Hb_004228_050 Hb_002305_040 Hb_002305_040 Hb_000042_040--Hb_002305_040 Hb_075653_010 Hb_075653_010 Hb_000042_040--Hb_075653_010 Hb_001040_050 Hb_001040_050 Hb_000347_160--Hb_001040_050 Hb_005649_050 Hb_005649_050 Hb_000347_160--Hb_005649_050 Hb_000347_160--Hb_087793_010 Hb_002078_310 Hb_002078_310 Hb_000347_160--Hb_002078_310 Hb_006788_130 Hb_006788_130 Hb_000347_160--Hb_006788_130 Hb_000347_160--Hb_114292_010 Hb_032011_020 Hb_032011_020 Hb_087793_010--Hb_032011_020 Hb_023558_010 Hb_023558_010 Hb_087793_010--Hb_023558_010 Hb_169136_010 Hb_169136_010 Hb_087793_010--Hb_169136_010 Hb_002837_120 Hb_002837_120 Hb_087793_010--Hb_002837_120 Hb_087793_010--Hb_006788_130 Hb_000069_390 Hb_000069_390 Hb_000107_670--Hb_000069_390 Hb_007416_380 Hb_007416_380 Hb_000107_670--Hb_007416_380 Hb_002942_170 Hb_002942_170 Hb_000107_670--Hb_002942_170 Hb_000866_100 Hb_000866_100 Hb_000107_670--Hb_000866_100 Hb_000284_280 Hb_000284_280 Hb_000107_670--Hb_000284_280 Hb_001935_040 Hb_001935_040 Hb_114292_010--Hb_001935_040 Hb_000142_030 Hb_000142_030 Hb_114292_010--Hb_000142_030 Hb_002218_050 Hb_002218_050 Hb_114292_010--Hb_002218_050 Hb_000115_190 Hb_000115_190 Hb_114292_010--Hb_000115_190 Hb_000367_240 Hb_000367_240 Hb_114292_010--Hb_000367_240 Hb_004800_030 Hb_004800_030 Hb_004449_160--Hb_004800_030 Hb_074660_010 Hb_074660_010 Hb_004449_160--Hb_074660_010 Hb_171646_010 Hb_171646_010 Hb_004449_160--Hb_171646_010 Hb_004449_160--Hb_169136_010 Hb_000069_400 Hb_000069_400 Hb_004449_160--Hb_000069_400 Hb_000748_100 Hb_000748_100 Hb_004449_160--Hb_000748_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.077006 11.6117 1.62439 0 0.533437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172644 0.94923 0 0.172051 0

CAGE analysis