Hb_087793_010

Information

Type -
Description -
Location Contig87793: 1-768
Sequence    

Annotation

kegg
ID rcu:RCOM_0066480
description hypothetical protein
nr
ID XP_002531427.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SAC4
description F-box protein At1g10780 OS=Arabidopsis thaliana GN=At1g10780 PE=2 SV=1
trembl
ID B9SZK8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0066480 PE=4 SV=1
Gene Ontology
ID GO:0044238
description f-box protein at1g10780

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087793_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_032011_020 0.0982379979 - - alpha-farnesene synthase [Ricinus communis]
3 Hb_023558_010 0.1179339448 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
4 Hb_000347_160 0.1191096714 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
5 Hb_169136_010 0.128531895 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002837_120 0.1319750033 - - PREDICTED: legumin A-like [Jatropha curcas]
7 Hb_006788_130 0.1336717432 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
8 Hb_000084_230 0.1394742724 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
9 Hb_000173_040 0.1395682644 - - putative xylanase inhibitor, partial [Triticum aestivum]
10 Hb_154114_040 0.1395756421 - - hypothetical protein B456_001G056600 [Gossypium raimondii]
11 Hb_000193_040 0.1396321711 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
12 Hb_011179_010 0.139647996 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
13 Hb_022862_010 0.1397097504 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
14 Hb_030385_030 0.1398067264 - - PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
15 Hb_000769_040 0.1399317108 - - hypothetical protein VITISV_028082 [Vitis vinifera]
16 Hb_012675_030 0.140354597 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]
17 Hb_090511_010 0.1403871485 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
18 Hb_130862_010 0.14064553 - - purine permease, putative [Ricinus communis]
19 Hb_005141_020 0.140687528 - - laccase, putative [Ricinus communis]
20 Hb_004117_070 0.1410446441 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]

Gene co-expression network

sample Hb_087793_010 Hb_087793_010 Hb_032011_020 Hb_032011_020 Hb_087793_010--Hb_032011_020 Hb_023558_010 Hb_023558_010 Hb_087793_010--Hb_023558_010 Hb_000347_160 Hb_000347_160 Hb_087793_010--Hb_000347_160 Hb_169136_010 Hb_169136_010 Hb_087793_010--Hb_169136_010 Hb_002837_120 Hb_002837_120 Hb_087793_010--Hb_002837_120 Hb_006788_130 Hb_006788_130 Hb_087793_010--Hb_006788_130 Hb_032011_020--Hb_023558_010 Hb_032011_020--Hb_169136_010 Hb_022092_100 Hb_022092_100 Hb_032011_020--Hb_022092_100 Hb_002151_140 Hb_002151_140 Hb_032011_020--Hb_002151_140 Hb_000784_050 Hb_000784_050 Hb_032011_020--Hb_000784_050 Hb_000280_070 Hb_000280_070 Hb_032011_020--Hb_000280_070 Hb_000417_240 Hb_000417_240 Hb_023558_010--Hb_000417_240 Hb_003995_040 Hb_003995_040 Hb_023558_010--Hb_003995_040 Hb_000173_070 Hb_000173_070 Hb_023558_010--Hb_000173_070 Hb_000307_080 Hb_000307_080 Hb_023558_010--Hb_000307_080 Hb_007975_070 Hb_007975_070 Hb_023558_010--Hb_007975_070 Hb_001040_050 Hb_001040_050 Hb_000347_160--Hb_001040_050 Hb_005649_050 Hb_005649_050 Hb_000347_160--Hb_005649_050 Hb_002078_310 Hb_002078_310 Hb_000347_160--Hb_002078_310 Hb_000347_160--Hb_006788_130 Hb_114292_010 Hb_114292_010 Hb_000347_160--Hb_114292_010 Hb_006142_020 Hb_006142_020 Hb_169136_010--Hb_006142_020 Hb_169136_010--Hb_002837_120 Hb_169136_010--Hb_023558_010 Hb_169136_010--Hb_007975_070 Hb_105767_030 Hb_105767_030 Hb_169136_010--Hb_105767_030 Hb_001969_030 Hb_001969_030 Hb_002837_120--Hb_001969_030 Hb_056196_020 Hb_056196_020 Hb_002837_120--Hb_056196_020 Hb_000853_020 Hb_000853_020 Hb_002837_120--Hb_000853_020 Hb_004174_030 Hb_004174_030 Hb_002837_120--Hb_004174_030 Hb_004097_030 Hb_004097_030 Hb_002837_120--Hb_004097_030 Hb_000084_230 Hb_000084_230 Hb_006788_130--Hb_000084_230 Hb_001564_100 Hb_001564_100 Hb_006788_130--Hb_001564_100 Hb_001235_040 Hb_001235_040 Hb_006788_130--Hb_001235_040 Hb_001220_020 Hb_001220_020 Hb_006788_130--Hb_001220_020 Hb_006788_130--Hb_004174_030 Hb_003018_210 Hb_003018_210 Hb_006788_130--Hb_003018_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0960184 8.73412 1.95364 0.0336353 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0772201 0.121418 0 0.0986624 0

CAGE analysis