Hb_000753_220

Information

Type -
Description -
Location Contig753: 233635-234799
Sequence    

Annotation

kegg
ID rcu:RCOM_1467930
description hypothetical protein
nr
ID XP_002514618.1
description hypothetical protein RCOM_1467930 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RLJ9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1467930 PE=4 SV=1
Gene Ontology
ID GO:0005774
description chaperone -domain superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56928: 234222-237468 , PASA_asmbl_56929: 234321-237288
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000753_220 0.0 - - hypothetical protein RCOM_1467930 [Ricinus communis]
2 Hb_004019_130 0.0750095401 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
3 Hb_000129_060 0.0750285315 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
4 Hb_162008_030 0.0775941505 - - cytochrome p450 [Ageratina adenophora]
5 Hb_001546_100 0.0833474575 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
6 Hb_029879_040 0.0849734557 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
7 Hb_002028_230 0.0853114846 - - Pectinesterase-3 precursor, putative [Ricinus communis]
8 Hb_002030_140 0.0861503754 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
9 Hb_022929_010 0.0868671382 - - zinc/iron transporter, putative [Ricinus communis]
10 Hb_149407_010 0.0871079064 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
11 Hb_000680_080 0.087114603 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
12 Hb_012573_060 0.0891590937 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
13 Hb_121680_010 0.0905047532 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
14 Hb_000077_430 0.0941566713 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
15 Hb_000212_170 0.0963686271 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
16 Hb_162008_040 0.0983753479 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
17 Hb_007218_010 0.0985416759 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X1 [Populus euphratica]
18 Hb_078641_020 0.1008768355 - - Pectinesterase-2 precursor, putative [Ricinus communis]
19 Hb_007157_050 0.1015422287 - - hypothetical protein RCOM_0711500 [Ricinus communis]
20 Hb_003411_080 0.1059873547 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000753_220 Hb_000753_220 Hb_004019_130 Hb_004019_130 Hb_000753_220--Hb_004019_130 Hb_000129_060 Hb_000129_060 Hb_000753_220--Hb_000129_060 Hb_162008_030 Hb_162008_030 Hb_000753_220--Hb_162008_030 Hb_001546_100 Hb_001546_100 Hb_000753_220--Hb_001546_100 Hb_029879_040 Hb_029879_040 Hb_000753_220--Hb_029879_040 Hb_002028_230 Hb_002028_230 Hb_000753_220--Hb_002028_230 Hb_004019_130--Hb_000129_060 Hb_004019_130--Hb_162008_030 Hb_004019_130--Hb_001546_100 Hb_002030_140 Hb_002030_140 Hb_004019_130--Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_004019_130--Hb_022929_010 Hb_004019_130--Hb_029879_040 Hb_000129_060--Hb_162008_030 Hb_000129_060--Hb_029879_040 Hb_000129_060--Hb_001546_100 Hb_000129_060--Hb_002028_230 Hb_149407_010 Hb_149407_010 Hb_000129_060--Hb_149407_010 Hb_162008_030--Hb_149407_010 Hb_162008_030--Hb_029879_040 Hb_162008_030--Hb_002028_230 Hb_162008_030--Hb_001546_100 Hb_001546_100--Hb_002030_140 Hb_001546_100--Hb_022929_010 Hb_000680_080 Hb_000680_080 Hb_001546_100--Hb_000680_080 Hb_012573_060 Hb_012573_060 Hb_001546_100--Hb_012573_060 Hb_000077_430 Hb_000077_430 Hb_001546_100--Hb_000077_430 Hb_029879_040--Hb_149407_010 Hb_029879_040--Hb_002028_230 Hb_029879_040--Hb_000077_430 Hb_003411_080 Hb_003411_080 Hb_002028_230--Hb_003411_080 Hb_002028_230--Hb_004019_130 Hb_002028_230--Hb_149407_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 12.4283 0.525841 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.146647 0 0 0

CAGE analysis