Hb_000349_190

Information

Type transcription factor
Description TF Family: GRF
Location Contig349: 208041-208892
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08310g
description POPTRDRAFT_548554; hypothetical protein
nr
ID XP_002298083.2
description hypothetical protein POPTR_0001s08310g [Populus trichocarpa]
swissprot
ID Q6AWX8
description Growth-regulating factor 11 OS=Oryza sativa subsp. japonica GN=GRF11 PE=2 SV=1
trembl
ID B9GKS4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08310g PE=4 SV=2
Gene Ontology
ID GO:0005634
description growth-regulating factor 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36310: 207622-207850 , PASA_asmbl_36311: 208192-208995
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000349_190 0.0 transcription factor TF Family: GRF hypothetical protein POPTR_0001s08310g [Populus trichocarpa]
2 Hb_004163_020 0.1881469981 - - -
3 Hb_004129_080 0.2125296422 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
4 Hb_000264_120 0.217093314 - - Stem-specific protein TSJT1, putative [Ricinus communis]
5 Hb_000975_140 0.2315659122 - - lactoylglutathione lyase family protein [Populus trichocarpa]
6 Hb_001246_050 0.2488244264 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
7 Hb_000042_040 0.2491977975 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
8 Hb_002979_030 0.2512708804 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
9 Hb_000111_400 0.2595355475 - - hypothetical protein POPTR_0003s19310g [Populus trichocarpa]
10 Hb_000181_190 0.2651172445 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
11 Hb_002639_170 0.2812711269 - - carboxy-lyase, putative [Ricinus communis]
12 Hb_010288_050 0.2859848007 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
13 Hb_008221_020 0.2883545633 - - hypothetical protein JCGZ_15014 [Jatropha curcas]
14 Hb_000028_240 0.2889300211 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008014_060 0.2893634932 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
16 Hb_000111_410 0.2901545713 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003401_010 0.3027921007 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
18 Hb_000069_580 0.3036254354 - - conserved hypothetical protein [Ricinus communis]
19 Hb_114292_010 0.3057864812 - - conserved hypothetical protein [Ricinus communis]
20 Hb_087793_010 0.3078275364 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000349_190 Hb_000349_190 Hb_004163_020 Hb_004163_020 Hb_000349_190--Hb_004163_020 Hb_004129_080 Hb_004129_080 Hb_000349_190--Hb_004129_080 Hb_000264_120 Hb_000264_120 Hb_000349_190--Hb_000264_120 Hb_000975_140 Hb_000975_140 Hb_000349_190--Hb_000975_140 Hb_001246_050 Hb_001246_050 Hb_000349_190--Hb_001246_050 Hb_000042_040 Hb_000042_040 Hb_000349_190--Hb_000042_040 Hb_004163_020--Hb_000042_040 Hb_000111_400 Hb_000111_400 Hb_004163_020--Hb_000111_400 Hb_004163_020--Hb_001246_050 Hb_107429_010 Hb_107429_010 Hb_004163_020--Hb_107429_010 Hb_000175_150 Hb_000175_150 Hb_004163_020--Hb_000175_150 Hb_004129_080--Hb_000264_120 Hb_002639_170 Hb_002639_170 Hb_004129_080--Hb_002639_170 Hb_004586_310 Hb_004586_310 Hb_004129_080--Hb_004586_310 Hb_114292_010 Hb_114292_010 Hb_004129_080--Hb_114292_010 Hb_004129_080--Hb_000975_140 Hb_002641_040 Hb_002641_040 Hb_000264_120--Hb_002641_040 Hb_000181_190 Hb_000181_190 Hb_000264_120--Hb_000181_190 Hb_089889_010 Hb_089889_010 Hb_000264_120--Hb_089889_010 Hb_000264_120--Hb_004163_020 Hb_000975_140--Hb_000042_040 Hb_000347_160 Hb_000347_160 Hb_000975_140--Hb_000347_160 Hb_087793_010 Hb_087793_010 Hb_000975_140--Hb_087793_010 Hb_000107_670 Hb_000107_670 Hb_000975_140--Hb_000107_670 Hb_000975_140--Hb_114292_010 Hb_004449_160 Hb_004449_160 Hb_000975_140--Hb_004449_160 Hb_008221_020 Hb_008221_020 Hb_001246_050--Hb_008221_020 Hb_000069_580 Hb_000069_580 Hb_001246_050--Hb_000069_580 Hb_002435_020 Hb_002435_020 Hb_001246_050--Hb_002435_020 Hb_008014_060 Hb_008014_060 Hb_001246_050--Hb_008014_060 Hb_002259_180 Hb_002259_180 Hb_001246_050--Hb_002259_180 Hb_000753_220 Hb_000753_220 Hb_000042_040--Hb_000753_220 Hb_002585_050 Hb_002585_050 Hb_000042_040--Hb_002585_050 Hb_000592_150 Hb_000592_150 Hb_000042_040--Hb_000592_150 Hb_004228_050 Hb_004228_050 Hb_000042_040--Hb_004228_050 Hb_002305_040 Hb_002305_040 Hb_000042_040--Hb_002305_040 Hb_075653_010 Hb_075653_010 Hb_000042_040--Hb_075653_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 4.72134 0.41099 0.0881777 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.203465 1.11933 0 0.0655957 0

CAGE analysis