Hb_008014_060

Information

Type -
Description -
Location Contig8014: 98436-99279
Sequence    

Annotation

kegg
ID rcu:RCOM_1039440
description hypothetical protein
nr
ID XP_012068007.1
description PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067LBI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15886 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008014_060 0.0 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
2 Hb_001190_050 0.1242907832 - - hypothetical protein JCGZ_20709 [Jatropha curcas]
3 Hb_002791_040 0.1276570638 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
4 Hb_001246_050 0.2205078868 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
5 Hb_008221_020 0.2422906375 - - hypothetical protein JCGZ_15014 [Jatropha curcas]
6 Hb_000069_580 0.2553193062 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000025_390 0.2757249904 - - PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
8 Hb_002435_020 0.276287709 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
9 Hb_000349_190 0.2893634932 transcription factor TF Family: GRF hypothetical protein POPTR_0001s08310g [Populus trichocarpa]
10 Hb_003626_010 0.2907806041 - - hypothetical protein JCGZ_07378 [Jatropha curcas]
11 Hb_002259_180 0.3166331998 - - -
12 Hb_004163_020 0.321304461 - - -
13 Hb_007451_080 0.3278776089 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
14 Hb_006355_120 0.3293779735 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000264_120 0.3302164442 - - Stem-specific protein TSJT1, putative [Ricinus communis]
16 Hb_001410_050 0.3329672042 - - putative polyprotein [Oryza sativa Japonica Group]
17 Hb_000261_530 0.3357066513 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
18 Hb_003209_180 0.3459439083 - - Alpha-1,4 glucan phosphorylase L-2 isozyme [Morus notabilis]
19 Hb_001249_040 0.3509374083 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
20 Hb_000816_070 0.3543407983 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008014_060 Hb_008014_060 Hb_001190_050 Hb_001190_050 Hb_008014_060--Hb_001190_050 Hb_002791_040 Hb_002791_040 Hb_008014_060--Hb_002791_040 Hb_001246_050 Hb_001246_050 Hb_008014_060--Hb_001246_050 Hb_008221_020 Hb_008221_020 Hb_008014_060--Hb_008221_020 Hb_000069_580 Hb_000069_580 Hb_008014_060--Hb_000069_580 Hb_000025_390 Hb_000025_390 Hb_008014_060--Hb_000025_390 Hb_001190_050--Hb_002791_040 Hb_001190_050--Hb_000069_580 Hb_001190_050--Hb_008221_020 Hb_003626_010 Hb_003626_010 Hb_001190_050--Hb_003626_010 Hb_002435_020 Hb_002435_020 Hb_001190_050--Hb_002435_020 Hb_002791_040--Hb_003626_010 Hb_002791_040--Hb_000069_580 Hb_002791_040--Hb_008221_020 Hb_002791_040--Hb_002435_020 Hb_001246_050--Hb_008221_020 Hb_001246_050--Hb_000069_580 Hb_001246_050--Hb_002435_020 Hb_004163_020 Hb_004163_020 Hb_001246_050--Hb_004163_020 Hb_002259_180 Hb_002259_180 Hb_001246_050--Hb_002259_180 Hb_008221_020--Hb_000069_580 Hb_008221_020--Hb_002435_020 Hb_008221_020--Hb_002259_180 Hb_006355_120 Hb_006355_120 Hb_008221_020--Hb_006355_120 Hb_001410_050 Hb_001410_050 Hb_008221_020--Hb_001410_050 Hb_000069_580--Hb_002435_020 Hb_000069_580--Hb_002259_180 Hb_000069_580--Hb_006355_120 Hb_000069_580--Hb_001410_050 Hb_000122_090 Hb_000122_090 Hb_000025_390--Hb_000122_090 Hb_154114_020 Hb_154114_020 Hb_000025_390--Hb_154114_020 Hb_000069_250 Hb_000069_250 Hb_000025_390--Hb_000069_250 Hb_005015_040 Hb_005015_040 Hb_000025_390--Hb_005015_040 Hb_010672_040 Hb_010672_040 Hb_000025_390--Hb_010672_040 Hb_009554_020 Hb_009554_020 Hb_000025_390--Hb_009554_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.480715 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.152853 0 0.0653404 0

CAGE analysis