Hb_000122_090

Information

Type -
Description -
Location Contig122: 79827-87964
Sequence    

Annotation

kegg
ID rcu:RCOM_0688100
description hypothetical protein
nr
ID XP_002520811.1
description hypothetical protein RCOM_0688100 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S492
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0688100 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cation h(+) antiporter 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_090 0.0 - - hypothetical protein RCOM_0688100 [Ricinus communis]
2 Hb_000025_390 0.1516229484 - - PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
3 Hb_154114_020 0.1763489486 - - -
4 Hb_000069_250 0.193765407 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
5 Hb_000340_070 0.1956200288 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
6 Hb_000042_020 0.203208775 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
7 Hb_002534_040 0.2157822205 - - Calmodulin, putative [Ricinus communis]
8 Hb_038601_010 0.2227392053 - - PREDICTED: uncharacterized protein LOC102606280 [Solanum tuberosum]
9 Hb_001143_200 0.2322449021 transcription factor TF Family: NAC NAC domain protein [Glycine max]
10 Hb_148146_030 0.2332348892 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
11 Hb_010672_040 0.2339574146 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
12 Hb_000280_100 0.2346233008 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
13 Hb_000604_080 0.2374419526 - - Fgenesh protein [Medicago truncatula]
14 Hb_009554_020 0.2393408745 - - PREDICTED: em-like protein GEA6 [Sesamum indicum]
15 Hb_002435_010 0.2432737 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
16 Hb_002435_070 0.2461080605 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
17 Hb_007970_030 0.2482674861 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
18 Hb_182291_020 0.2490555918 - - hypothetical protein CICLE_v10029871mg [Citrus clementina]
19 Hb_005015_040 0.2490783782 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana sylvestris]
20 Hb_003762_010 0.2495833619 - - -

Gene co-expression network

sample Hb_000122_090 Hb_000122_090 Hb_000025_390 Hb_000025_390 Hb_000122_090--Hb_000025_390 Hb_154114_020 Hb_154114_020 Hb_000122_090--Hb_154114_020 Hb_000069_250 Hb_000069_250 Hb_000122_090--Hb_000069_250 Hb_000340_070 Hb_000340_070 Hb_000122_090--Hb_000340_070 Hb_000042_020 Hb_000042_020 Hb_000122_090--Hb_000042_020 Hb_002534_040 Hb_002534_040 Hb_000122_090--Hb_002534_040 Hb_000025_390--Hb_154114_020 Hb_000025_390--Hb_000069_250 Hb_005015_040 Hb_005015_040 Hb_000025_390--Hb_005015_040 Hb_010672_040 Hb_010672_040 Hb_000025_390--Hb_010672_040 Hb_009554_020 Hb_009554_020 Hb_000025_390--Hb_009554_020 Hb_038601_010 Hb_038601_010 Hb_154114_020--Hb_038601_010 Hb_002435_070 Hb_002435_070 Hb_154114_020--Hb_002435_070 Hb_154114_020--Hb_000340_070 Hb_008764_010 Hb_008764_010 Hb_154114_020--Hb_008764_010 Hb_010578_020 Hb_010578_020 Hb_000069_250--Hb_010578_020 Hb_000069_250--Hb_009554_020 Hb_001433_120 Hb_001433_120 Hb_000069_250--Hb_001433_120 Hb_000069_250--Hb_005015_040 Hb_136620_010 Hb_136620_010 Hb_000069_250--Hb_136620_010 Hb_000280_100 Hb_000280_100 Hb_000069_250--Hb_000280_100 Hb_000340_070--Hb_002534_040 Hb_000604_080 Hb_000604_080 Hb_000340_070--Hb_000604_080 Hb_002435_010 Hb_002435_010 Hb_000340_070--Hb_002435_010 Hb_000574_270 Hb_000574_270 Hb_000340_070--Hb_000574_270 Hb_150745_010 Hb_150745_010 Hb_000340_070--Hb_150745_010 Hb_000668_190 Hb_000668_190 Hb_000340_070--Hb_000668_190 Hb_001143_200 Hb_001143_200 Hb_000042_020--Hb_001143_200 Hb_000042_020--Hb_000280_100 Hb_116420_050 Hb_116420_050 Hb_000042_020--Hb_116420_050 Hb_027065_010 Hb_027065_010 Hb_000042_020--Hb_027065_010 Hb_007101_250 Hb_007101_250 Hb_000042_020--Hb_007101_250 Hb_127372_010 Hb_127372_010 Hb_000042_020--Hb_127372_010 Hb_002534_040--Hb_000668_190 Hb_000413_220 Hb_000413_220 Hb_002534_040--Hb_000413_220 Hb_002534_040--Hb_002435_010 Hb_004724_250 Hb_004724_250 Hb_002534_040--Hb_004724_250 Hb_002534_040--Hb_010672_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0463079 0.330779 0.00464873 0.00626487 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0119477 0 0.0236999 0

CAGE analysis