Hb_000025_390

Information

Type -
Description -
Location Contig25: 373299-374150
Sequence    

Annotation

kegg
ID rcu:RCOM_0067660
description DNA binding protein, putative
nr
ID XP_011004249.1
description PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
swissprot
ID Q9LTA2
description AT-hook motif nuclear-localized protein 17 OS=Arabidopsis thaliana GN=AHL17 PE=2 SV=1
trembl
ID B9SY33
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0067660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_390 0.0 - - PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
2 Hb_000122_090 0.1516229484 - - hypothetical protein RCOM_0688100 [Ricinus communis]
3 Hb_154114_020 0.2056166796 - - -
4 Hb_000069_250 0.2300287705 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
5 Hb_005015_040 0.2350822999 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana sylvestris]
6 Hb_010672_040 0.2425085041 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
7 Hb_009554_020 0.2462390808 - - PREDICTED: em-like protein GEA6 [Sesamum indicum]
8 Hb_000165_270 0.2467303208 transcription factor TF Family: Tify JAZ10 [Hevea brasiliensis]
9 Hb_003147_020 0.2608495107 - - hypothetical protein POPTR_0019s07690g [Populus trichocarpa]
10 Hb_148146_030 0.2613699474 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
11 Hb_136620_010 0.2636658446 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
12 Hb_002693_040 0.2641336198 - - hypersensitive-induced response protein [Carica papaya]
13 Hb_002534_040 0.2671051019 - - Calmodulin, putative [Ricinus communis]
14 Hb_007632_200 0.2692855996 - - hypothetical protein L484_018221 [Morus notabilis]
15 Hb_000206_080 0.2698574445 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
16 Hb_000042_020 0.2732046191 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
17 Hb_007970_030 0.2754294751 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
18 Hb_008014_060 0.2757249904 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
19 Hb_182291_020 0.2769201746 - - hypothetical protein CICLE_v10029871mg [Citrus clementina]
20 Hb_000340_070 0.2771047066 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_390 Hb_000025_390 Hb_000122_090 Hb_000122_090 Hb_000025_390--Hb_000122_090 Hb_154114_020 Hb_154114_020 Hb_000025_390--Hb_154114_020 Hb_000069_250 Hb_000069_250 Hb_000025_390--Hb_000069_250 Hb_005015_040 Hb_005015_040 Hb_000025_390--Hb_005015_040 Hb_010672_040 Hb_010672_040 Hb_000025_390--Hb_010672_040 Hb_009554_020 Hb_009554_020 Hb_000025_390--Hb_009554_020 Hb_000122_090--Hb_154114_020 Hb_000122_090--Hb_000069_250 Hb_000340_070 Hb_000340_070 Hb_000122_090--Hb_000340_070 Hb_000042_020 Hb_000042_020 Hb_000122_090--Hb_000042_020 Hb_002534_040 Hb_002534_040 Hb_000122_090--Hb_002534_040 Hb_038601_010 Hb_038601_010 Hb_154114_020--Hb_038601_010 Hb_002435_070 Hb_002435_070 Hb_154114_020--Hb_002435_070 Hb_154114_020--Hb_000340_070 Hb_008764_010 Hb_008764_010 Hb_154114_020--Hb_008764_010 Hb_010578_020 Hb_010578_020 Hb_000069_250--Hb_010578_020 Hb_000069_250--Hb_009554_020 Hb_001433_120 Hb_001433_120 Hb_000069_250--Hb_001433_120 Hb_000069_250--Hb_005015_040 Hb_136620_010 Hb_136620_010 Hb_000069_250--Hb_136620_010 Hb_000280_100 Hb_000280_100 Hb_000069_250--Hb_000280_100 Hb_005015_040--Hb_009554_020 Hb_148146_030 Hb_148146_030 Hb_005015_040--Hb_148146_030 Hb_005015_040--Hb_136620_010 Hb_007970_030 Hb_007970_030 Hb_005015_040--Hb_007970_030 Hb_182291_020 Hb_182291_020 Hb_005015_040--Hb_182291_020 Hb_000206_080 Hb_000206_080 Hb_005015_040--Hb_000206_080 Hb_124302_010 Hb_124302_010 Hb_010672_040--Hb_124302_010 Hb_003147_020 Hb_003147_020 Hb_010672_040--Hb_003147_020 Hb_010672_040--Hb_002534_040 Hb_032223_010 Hb_032223_010 Hb_010672_040--Hb_032223_010 Hb_000165_270 Hb_000165_270 Hb_010672_040--Hb_000165_270 Hb_010672_040--Hb_001433_120 Hb_009554_020--Hb_007970_030 Hb_009554_020--Hb_182291_020 Hb_000116_340 Hb_000116_340 Hb_009554_020--Hb_000116_340 Hb_003767_020 Hb_003767_020 Hb_009554_020--Hb_003767_020 Hb_000160_340 Hb_000160_340 Hb_009554_020--Hb_000160_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.049877 0.694744 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.048855 0 0.0394675 0

CAGE analysis