Hb_000165_270

Information

Type transcription factor
Description TF Family: Tify
Location Contig165: 260008-264528
Sequence    

Annotation

kegg
ID pop:POPTR_0003s16350g
description POPTRDRAFT_712551; hypothetical protein
nr
ID AIY25011.1
description JAZ10 [Hevea brasiliensis]
swissprot
ID Q93ZM9
description Protein TIFY 9 OS=Arabidopsis thaliana GN=TIFY9 PE=1 SV=1
trembl
ID A0A0B4RUX7
description JAZ10 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0001101
description protein tify 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15213: 259965-262432 , PASA_asmbl_15215: 262213-262388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000165_270 0.0 transcription factor TF Family: Tify JAZ10 [Hevea brasiliensis]
2 Hb_001433_120 0.093563032 - - hypothetical protein CICLE_v10003574mg, partial [Citrus clementina]
3 Hb_007218_010 0.1430894757 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X1 [Populus euphratica]
4 Hb_010672_040 0.1462896073 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
5 Hb_007157_050 0.146872025 - - hypothetical protein RCOM_0711500 [Ricinus communis]
6 Hb_000347_160 0.1496517535 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
7 Hb_005854_060 0.1533099059 - - short-chain dehydrogenase, putative [Ricinus communis]
8 Hb_000206_080 0.1549090211 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
9 Hb_136620_010 0.155191244 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
10 Hb_001040_050 0.155954063 - - Stem-specific protein TSJT1, putative [Ricinus communis]
11 Hb_001680_060 0.1592287677 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010288_050 0.1615863016 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
13 Hb_000753_220 0.1627805347 - - hypothetical protein RCOM_1467930 [Ricinus communis]
14 Hb_003411_080 0.1632508996 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000069_250 0.1635045454 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
16 Hb_162008_040 0.1642237831 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
17 Hb_002693_040 0.1643863934 - - hypersensitive-induced response protein [Carica papaya]
18 Hb_007632_200 0.1648632001 - - hypothetical protein L484_018221 [Morus notabilis]
19 Hb_032223_010 0.166864616 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
20 Hb_078641_020 0.1668832567 - - Pectinesterase-2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000165_270 Hb_000165_270 Hb_001433_120 Hb_001433_120 Hb_000165_270--Hb_001433_120 Hb_007218_010 Hb_007218_010 Hb_000165_270--Hb_007218_010 Hb_010672_040 Hb_010672_040 Hb_000165_270--Hb_010672_040 Hb_007157_050 Hb_007157_050 Hb_000165_270--Hb_007157_050 Hb_000347_160 Hb_000347_160 Hb_000165_270--Hb_000347_160 Hb_005854_060 Hb_005854_060 Hb_000165_270--Hb_005854_060 Hb_001433_120--Hb_007218_010 Hb_001433_120--Hb_005854_060 Hb_001433_120--Hb_007157_050 Hb_001680_060 Hb_001680_060 Hb_001433_120--Hb_001680_060 Hb_002447_060 Hb_002447_060 Hb_001433_120--Hb_002447_060 Hb_007218_010--Hb_005854_060 Hb_162008_040 Hb_162008_040 Hb_007218_010--Hb_162008_040 Hb_007218_010--Hb_007157_050 Hb_121680_010 Hb_121680_010 Hb_007218_010--Hb_121680_010 Hb_001546_100 Hb_001546_100 Hb_007218_010--Hb_001546_100 Hb_002030_140 Hb_002030_140 Hb_007218_010--Hb_002030_140 Hb_124302_010 Hb_124302_010 Hb_010672_040--Hb_124302_010 Hb_003147_020 Hb_003147_020 Hb_010672_040--Hb_003147_020 Hb_002534_040 Hb_002534_040 Hb_010672_040--Hb_002534_040 Hb_032223_010 Hb_032223_010 Hb_010672_040--Hb_032223_010 Hb_010672_040--Hb_001433_120 Hb_004881_040 Hb_004881_040 Hb_007157_050--Hb_004881_040 Hb_007157_050--Hb_121680_010 Hb_007157_050--Hb_001680_060 Hb_162008_020 Hb_162008_020 Hb_007157_050--Hb_162008_020 Hb_007157_050--Hb_162008_040 Hb_007157_050--Hb_005854_060 Hb_001040_050 Hb_001040_050 Hb_000347_160--Hb_001040_050 Hb_005649_050 Hb_005649_050 Hb_000347_160--Hb_005649_050 Hb_087793_010 Hb_087793_010 Hb_000347_160--Hb_087793_010 Hb_002078_310 Hb_002078_310 Hb_000347_160--Hb_002078_310 Hb_006788_130 Hb_006788_130 Hb_000347_160--Hb_006788_130 Hb_114292_010 Hb_114292_010 Hb_000347_160--Hb_114292_010 Hb_005854_060--Hb_001680_060 Hb_021622_010 Hb_021622_010 Hb_005854_060--Hb_021622_010 Hb_005854_060--Hb_162008_040 Hb_000212_170 Hb_000212_170 Hb_005854_060--Hb_000212_170 Hb_012573_060 Hb_012573_060 Hb_005854_060--Hb_012573_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.52404 7.64857 285.374 15.5071 0.0885999 0.0254372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.941485 3.70228 2.19207 3.29409 0.671996

CAGE analysis