Hb_001246_050

Information

Type -
Description -
Location Contig1246: 40167-43018
Sequence    

Annotation

kegg
ID rcu:RCOM_0658780
description hypothetical protein
nr
ID XP_012083755.1
description PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1I4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14674 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001246_050 0.0 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
2 Hb_008221_020 0.1194727775 - - hypothetical protein JCGZ_15014 [Jatropha curcas]
3 Hb_000069_580 0.1482327999 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002435_020 0.1867330365 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_008014_060 0.2205078868 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
6 Hb_004163_020 0.2434802706 - - -
7 Hb_002259_180 0.2487739664 - - -
8 Hb_000349_190 0.2488244264 transcription factor TF Family: GRF hypothetical protein POPTR_0001s08310g [Populus trichocarpa]
9 Hb_006355_120 0.2665915938 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001410_050 0.2715042545 - - putative polyprotein [Oryza sativa Japonica Group]
11 Hb_004129_080 0.2915359439 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
12 Hb_001190_050 0.2918821672 - - hypothetical protein JCGZ_20709 [Jatropha curcas]
13 Hb_002791_040 0.2965918086 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
14 Hb_000264_120 0.296787554 - - Stem-specific protein TSJT1, putative [Ricinus communis]
15 Hb_000025_390 0.3038029472 - - PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
16 Hb_000661_210 0.3125649137 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000042_040 0.3187645582 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
18 Hb_011174_030 0.3208732114 - - -
19 Hb_000732_110 0.3281071276 - - hypothetical protein JCGZ_21339 [Jatropha curcas]
20 Hb_000753_220 0.3353997906 - - hypothetical protein RCOM_1467930 [Ricinus communis]

Gene co-expression network

sample Hb_001246_050 Hb_001246_050 Hb_008221_020 Hb_008221_020 Hb_001246_050--Hb_008221_020 Hb_000069_580 Hb_000069_580 Hb_001246_050--Hb_000069_580 Hb_002435_020 Hb_002435_020 Hb_001246_050--Hb_002435_020 Hb_008014_060 Hb_008014_060 Hb_001246_050--Hb_008014_060 Hb_004163_020 Hb_004163_020 Hb_001246_050--Hb_004163_020 Hb_002259_180 Hb_002259_180 Hb_001246_050--Hb_002259_180 Hb_008221_020--Hb_000069_580 Hb_008221_020--Hb_002435_020 Hb_008221_020--Hb_002259_180 Hb_006355_120 Hb_006355_120 Hb_008221_020--Hb_006355_120 Hb_001410_050 Hb_001410_050 Hb_008221_020--Hb_001410_050 Hb_000069_580--Hb_002435_020 Hb_000069_580--Hb_002259_180 Hb_000069_580--Hb_006355_120 Hb_000069_580--Hb_001410_050 Hb_002435_020--Hb_002259_180 Hb_002435_020--Hb_006355_120 Hb_002435_020--Hb_001410_050 Hb_001190_050 Hb_001190_050 Hb_008014_060--Hb_001190_050 Hb_002791_040 Hb_002791_040 Hb_008014_060--Hb_002791_040 Hb_008014_060--Hb_008221_020 Hb_008014_060--Hb_000069_580 Hb_000025_390 Hb_000025_390 Hb_008014_060--Hb_000025_390 Hb_000349_190 Hb_000349_190 Hb_004163_020--Hb_000349_190 Hb_000042_040 Hb_000042_040 Hb_004163_020--Hb_000042_040 Hb_000111_400 Hb_000111_400 Hb_004163_020--Hb_000111_400 Hb_107429_010 Hb_107429_010 Hb_004163_020--Hb_107429_010 Hb_000175_150 Hb_000175_150 Hb_004163_020--Hb_000175_150 Hb_002259_180--Hb_006355_120 Hb_002259_180--Hb_001410_050 Hb_005946_180 Hb_005946_180 Hb_002259_180--Hb_005946_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.324962 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0948509 0 0 0

CAGE analysis