Hb_001410_050

Information

Type -
Description -
Location Contig1410: 74160-75632
Sequence    

Annotation

kegg
ID cic:CICLE_v10033628mg
description hypothetical protein
nr
ID AAR06328.1
description putative polyprotein [Oryza sativa Japonica Group]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID Q75H25
description Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0027H16.17 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001410_050 0.0 - - putative polyprotein [Oryza sativa Japonica Group]
2 Hb_006355_120 0.0050453186 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002259_180 0.0233072809 - - -
4 Hb_002435_020 0.0864382395 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_000069_580 0.1252425911 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005946_180 0.1286278731 - - PREDICTED: uncharacterized protein LOC100818788 [Glycine max]
7 Hb_000139_210 0.1371763089 - - -
8 Hb_000264_330 0.1397913552 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
9 Hb_004970_080 0.1486240191 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
10 Hb_001950_130 0.1509741225 - - -
11 Hb_010534_030 0.1522168853 - - calcineurin-like phosphoesterase [Manihot esculenta]
12 Hb_000752_030 0.1526289256 transcription factor TF Family: bHLH hypothetical protein RCOM_0978110 [Ricinus communis]
13 Hb_008221_020 0.1540304811 - - hypothetical protein JCGZ_15014 [Jatropha curcas]
14 Hb_011174_030 0.2375661973 - - -
15 Hb_001246_050 0.2715042545 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
16 Hb_001190_050 0.2917135107 - - hypothetical protein JCGZ_20709 [Jatropha curcas]
17 Hb_002791_040 0.2951642781 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
18 Hb_107429_010 0.3113391085 - - PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
19 Hb_000392_460 0.3158240677 - - Pectate lyase precursor, putative [Ricinus communis]
20 Hb_001195_430 0.3160224929 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001410_050 Hb_001410_050 Hb_006355_120 Hb_006355_120 Hb_001410_050--Hb_006355_120 Hb_002259_180 Hb_002259_180 Hb_001410_050--Hb_002259_180 Hb_002435_020 Hb_002435_020 Hb_001410_050--Hb_002435_020 Hb_000069_580 Hb_000069_580 Hb_001410_050--Hb_000069_580 Hb_005946_180 Hb_005946_180 Hb_001410_050--Hb_005946_180 Hb_000139_210 Hb_000139_210 Hb_001410_050--Hb_000139_210 Hb_006355_120--Hb_002259_180 Hb_006355_120--Hb_002435_020 Hb_006355_120--Hb_000069_580 Hb_006355_120--Hb_005946_180 Hb_006355_120--Hb_000139_210 Hb_002259_180--Hb_002435_020 Hb_002259_180--Hb_000069_580 Hb_008221_020 Hb_008221_020 Hb_002259_180--Hb_008221_020 Hb_002259_180--Hb_005946_180 Hb_002435_020--Hb_000069_580 Hb_002435_020--Hb_008221_020 Hb_001246_050 Hb_001246_050 Hb_002435_020--Hb_001246_050 Hb_000069_580--Hb_008221_020 Hb_000069_580--Hb_001246_050 Hb_005946_180--Hb_000139_210 Hb_000264_330 Hb_000264_330 Hb_005946_180--Hb_000264_330 Hb_004970_080 Hb_004970_080 Hb_005946_180--Hb_004970_080 Hb_001950_130 Hb_001950_130 Hb_005946_180--Hb_001950_130 Hb_010534_030 Hb_010534_030 Hb_005946_180--Hb_010534_030 Hb_000752_030 Hb_000752_030 Hb_005946_180--Hb_000752_030 Hb_000139_210--Hb_000264_330 Hb_000139_210--Hb_004970_080 Hb_000139_210--Hb_001950_130 Hb_000139_210--Hb_010534_030 Hb_000139_210--Hb_000752_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0249294 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0284289 0 0 0

CAGE analysis