Hb_000752_030

Information

Type transcription factor
Description TF Family: bHLH
Location Contig752: 96121-98686
Sequence    

Annotation

kegg
ID rcu:RCOM_0978110
description hypothetical protein
nr
ID XP_002521283.1
description hypothetical protein RCOM_0978110 [Ricinus communis]
swissprot
ID Q9ZVX2
description Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana GN=AMS PE=1 SV=2
trembl
ID B9S5L4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0978110 PE=4 SV=1
Gene Ontology
ID GO:0032440
description transcription factor aborted microspores isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000752_030 0.0 transcription factor TF Family: bHLH hypothetical protein RCOM_0978110 [Ricinus communis]
2 Hb_010534_030 0.0004160581 - - calcineurin-like phosphoesterase [Manihot esculenta]
3 Hb_001950_130 0.0016707874 - - -
4 Hb_004970_080 0.004042901 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
5 Hb_000264_330 0.0129511438 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
6 Hb_000139_210 0.0155864324 - - -
7 Hb_005946_180 0.0241943759 - - PREDICTED: uncharacterized protein LOC100818788 [Glycine max]
8 Hb_001410_050 0.1526289256 - - putative polyprotein [Oryza sativa Japonica Group]
9 Hb_006355_120 0.1576293279 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002259_180 0.1757071601 - - -
11 Hb_002435_020 0.2379480104 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
12 Hb_114146_010 0.2594274956 - - hypothetical protein JCGZ_15608 [Jatropha curcas]
13 Hb_000069_580 0.2760130547 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003147_010 0.2915038364 - - PREDICTED: bark storage protein A-like [Jatropha curcas]
15 Hb_011174_030 0.3027480629 - - -
16 Hb_008221_020 0.304157075 - - hypothetical protein JCGZ_15014 [Jatropha curcas]
17 Hb_054865_070 0.3091768792 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
18 Hb_002890_070 0.32281355 - - ATP-dependent RNA helicase family protein [Populus trichocarpa]
19 Hb_107429_010 0.3434493886 - - PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
20 Hb_001348_200 0.3563565379 - - -

Gene co-expression network

sample Hb_000752_030 Hb_000752_030 Hb_010534_030 Hb_010534_030 Hb_000752_030--Hb_010534_030 Hb_001950_130 Hb_001950_130 Hb_000752_030--Hb_001950_130 Hb_004970_080 Hb_004970_080 Hb_000752_030--Hb_004970_080 Hb_000264_330 Hb_000264_330 Hb_000752_030--Hb_000264_330 Hb_000139_210 Hb_000139_210 Hb_000752_030--Hb_000139_210 Hb_005946_180 Hb_005946_180 Hb_000752_030--Hb_005946_180 Hb_010534_030--Hb_001950_130 Hb_010534_030--Hb_004970_080 Hb_010534_030--Hb_000264_330 Hb_010534_030--Hb_000139_210 Hb_010534_030--Hb_005946_180 Hb_001950_130--Hb_004970_080 Hb_001950_130--Hb_000264_330 Hb_001950_130--Hb_000139_210 Hb_001950_130--Hb_005946_180 Hb_004970_080--Hb_000264_330 Hb_004970_080--Hb_000139_210 Hb_004970_080--Hb_005946_180 Hb_000264_330--Hb_000139_210 Hb_000264_330--Hb_005946_180 Hb_000139_210--Hb_005946_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.016736 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0403216 0 0 0

CAGE analysis