Hb_005946_180

Information

Type -
Description -
Location Contig5946: 85600-85935
Sequence    

Annotation

kegg
ID gmx:100818788
description uncharacterized LOC100818788
nr
ID XP_003525268.1
description PREDICTED: uncharacterized protein LOC100818788 [Glycine max]
swissprot
ID -
description -
trembl
ID K7KRM8
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005946_180 0.0 - - PREDICTED: uncharacterized protein LOC100818788 [Glycine max]
2 Hb_000139_210 0.0086094597 - - -
3 Hb_000264_330 0.0112448825 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
4 Hb_004970_080 0.0201524078 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
5 Hb_001950_130 0.0225240206 - - -
6 Hb_010534_030 0.0237784316 - - calcineurin-like phosphoesterase [Manihot esculenta]
7 Hb_000752_030 0.0241943759 transcription factor TF Family: bHLH hypothetical protein RCOM_0978110 [Ricinus communis]
8 Hb_001410_050 0.1286278731 - - putative polyprotein [Oryza sativa Japonica Group]
9 Hb_006355_120 0.1336415072 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002259_180 0.1517703744 - - -
11 Hb_002435_020 0.2142239212 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
12 Hb_000069_580 0.2524465203 - - conserved hypothetical protein [Ricinus communis]
13 Hb_114146_010 0.2660806386 - - hypothetical protein JCGZ_15608 [Jatropha curcas]
14 Hb_008221_020 0.2807204174 - - hypothetical protein JCGZ_15014 [Jatropha curcas]
15 Hb_011174_030 0.2884832252 - - -
16 Hb_003147_010 0.3104535464 - - PREDICTED: bark storage protein A-like [Jatropha curcas]
17 Hb_054865_070 0.3126672978 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
18 Hb_107429_010 0.3344409833 - - PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
19 Hb_002890_070 0.3365028242 - - ATP-dependent RNA helicase family protein [Populus trichocarpa]
20 Hb_006535_010 0.3598920888 - - -

Gene co-expression network

sample Hb_005946_180 Hb_005946_180 Hb_000139_210 Hb_000139_210 Hb_005946_180--Hb_000139_210 Hb_000264_330 Hb_000264_330 Hb_005946_180--Hb_000264_330 Hb_004970_080 Hb_004970_080 Hb_005946_180--Hb_004970_080 Hb_001950_130 Hb_001950_130 Hb_005946_180--Hb_001950_130 Hb_010534_030 Hb_010534_030 Hb_005946_180--Hb_010534_030 Hb_000752_030 Hb_000752_030 Hb_005946_180--Hb_000752_030 Hb_000139_210--Hb_000264_330 Hb_000139_210--Hb_004970_080 Hb_000139_210--Hb_001950_130 Hb_000139_210--Hb_010534_030 Hb_000139_210--Hb_000752_030 Hb_000264_330--Hb_004970_080 Hb_000264_330--Hb_001950_130 Hb_000264_330--Hb_010534_030 Hb_000264_330--Hb_000752_030 Hb_004970_080--Hb_001950_130 Hb_004970_080--Hb_010534_030 Hb_004970_080--Hb_000752_030 Hb_001950_130--Hb_010534_030 Hb_001950_130--Hb_000752_030 Hb_010534_030--Hb_000752_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.10559 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.224812 0 0 0

CAGE analysis