Hb_002791_040

Information

Type -
Description -
Location Contig2791: 34738-35388
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002791_040 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_001190_050 0.0057263167 - - hypothetical protein JCGZ_20709 [Jatropha curcas]
3 Hb_008014_060 0.1276570638 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
4 Hb_003626_010 0.2587439463 - - hypothetical protein JCGZ_07378 [Jatropha curcas]
5 Hb_000069_580 0.2650408746 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008221_020 0.2654921713 - - hypothetical protein JCGZ_15014 [Jatropha curcas]
7 Hb_002435_020 0.2690369254 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
8 Hb_002259_180 0.2860100093 - - -
9 Hb_006355_120 0.2930641025 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001410_050 0.2951642781 - - putative polyprotein [Oryza sativa Japonica Group]
11 Hb_001246_050 0.2965918086 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
12 Hb_006535_010 0.3122461968 - - -
13 Hb_006655_040 0.3250722726 - - tau class glutathione transferase GSTU15 [Populus trichocarpa]
14 Hb_024898_020 0.3254020836 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_010815_050 0.3388750369 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
16 Hb_000349_190 0.3539363841 transcription factor TF Family: GRF hypothetical protein POPTR_0001s08310g [Populus trichocarpa]
17 Hb_011174_030 0.3552671123 - - -
18 Hb_007451_080 0.3610379512 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
19 Hb_003124_180 0.3645223693 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_005946_180 0.3661680462 - - PREDICTED: uncharacterized protein LOC100818788 [Glycine max]

Gene co-expression network

sample Hb_002791_040 Hb_002791_040 Hb_001190_050 Hb_001190_050 Hb_002791_040--Hb_001190_050 Hb_008014_060 Hb_008014_060 Hb_002791_040--Hb_008014_060 Hb_003626_010 Hb_003626_010 Hb_002791_040--Hb_003626_010 Hb_000069_580 Hb_000069_580 Hb_002791_040--Hb_000069_580 Hb_008221_020 Hb_008221_020 Hb_002791_040--Hb_008221_020 Hb_002435_020 Hb_002435_020 Hb_002791_040--Hb_002435_020 Hb_001190_050--Hb_008014_060 Hb_001190_050--Hb_000069_580 Hb_001190_050--Hb_008221_020 Hb_001190_050--Hb_003626_010 Hb_001190_050--Hb_002435_020 Hb_001246_050 Hb_001246_050 Hb_008014_060--Hb_001246_050 Hb_008014_060--Hb_008221_020 Hb_008014_060--Hb_000069_580 Hb_000025_390 Hb_000025_390 Hb_008014_060--Hb_000025_390 Hb_007451_080 Hb_007451_080 Hb_003626_010--Hb_007451_080 Hb_003095_090 Hb_003095_090 Hb_003626_010--Hb_003095_090 Hb_006655_040 Hb_006655_040 Hb_003626_010--Hb_006655_040 Hb_003626_010--Hb_008014_060 Hb_000069_580--Hb_008221_020 Hb_000069_580--Hb_002435_020 Hb_002259_180 Hb_002259_180 Hb_000069_580--Hb_002259_180 Hb_006355_120 Hb_006355_120 Hb_000069_580--Hb_006355_120 Hb_001410_050 Hb_001410_050 Hb_000069_580--Hb_001410_050 Hb_000069_580--Hb_001246_050 Hb_008221_020--Hb_002435_020 Hb_008221_020--Hb_001246_050 Hb_008221_020--Hb_002259_180 Hb_008221_020--Hb_006355_120 Hb_008221_020--Hb_001410_050 Hb_002435_020--Hb_002259_180 Hb_002435_020--Hb_006355_120 Hb_002435_020--Hb_001410_050 Hb_002435_020--Hb_001246_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.139756 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0837104 0 0.0344054 0

CAGE analysis