Hb_007451_080

Information

Type transcription factor
Description TF Family: NF-YB
Location Contig7451: 48330-48836
Sequence    

Annotation

kegg
ID rcu:RCOM_0680560
description ccaat-binding transcription factor subunit A, putative
nr
ID XP_002516901.1
description ccaat-binding transcription factor subunit A, putative [Ricinus communis]
swissprot
ID O82248
description Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1
trembl
ID B9RT32
description Ccaat-binding transcription factor subunit A, putative OS=Ricinus communis GN=RCOM_0680560 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nuclear transcription factor y subunit b-5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007451_080 0.0 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
2 Hb_002805_260 0.1775493478 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007654_010 0.1804140992 - - valacyclovir hydrolase, putative [Ricinus communis]
4 Hb_000809_070 0.2204849719 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 36-like [Jatropha curcas]
5 Hb_007645_110 0.2303253017 transcription factor TF Family: ERF hypothetical protein RCOM_0089590 [Ricinus communis]
6 Hb_003626_010 0.2322559867 - - hypothetical protein JCGZ_07378 [Jatropha curcas]
7 Hb_027028_010 0.2402819821 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
8 Hb_021943_010 0.2427643038 - - -
9 Hb_004017_020 0.2427691779 - - Squalene monooxygenase, putative [Ricinus communis]
10 Hb_027468_010 0.2427733944 - - kinase, putative [Ricinus communis]
11 Hb_003848_050 0.2427740262 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
12 Hb_001581_030 0.2427760032 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
13 Hb_000212_200 0.2427781209 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
14 Hb_004028_010 0.2427938855 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_158467_020 0.2428020387 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
16 Hb_002415_010 0.2428106783 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
17 Hb_005503_020 0.2428163556 - - Hypothetical protein glysoja_025074 [Glycine soja]
18 Hb_005062_090 0.2428275855 - - ferredoxin [Vibrio natriegens]
19 Hb_002233_180 0.2428582253 - - -
20 Hb_000123_130 0.2429247981 - - hypothetical protein POPTR_0008s05200g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_007451_080 Hb_007451_080 Hb_002805_260 Hb_002805_260 Hb_007451_080--Hb_002805_260 Hb_007654_010 Hb_007654_010 Hb_007451_080--Hb_007654_010 Hb_000809_070 Hb_000809_070 Hb_007451_080--Hb_000809_070 Hb_007645_110 Hb_007645_110 Hb_007451_080--Hb_007645_110 Hb_003626_010 Hb_003626_010 Hb_007451_080--Hb_003626_010 Hb_027028_010 Hb_027028_010 Hb_007451_080--Hb_027028_010 Hb_002805_260--Hb_007654_010 Hb_002805_260--Hb_027028_010 Hb_028013_030 Hb_028013_030 Hb_002805_260--Hb_028013_030 Hb_003119_120 Hb_003119_120 Hb_002805_260--Hb_003119_120 Hb_173764_010 Hb_173764_010 Hb_002805_260--Hb_173764_010 Hb_001890_040 Hb_001890_040 Hb_002805_260--Hb_001890_040 Hb_007654_010--Hb_007645_110 Hb_007017_110 Hb_007017_110 Hb_007654_010--Hb_007017_110 Hb_004316_160 Hb_004316_160 Hb_007654_010--Hb_004316_160 Hb_007951_080 Hb_007951_080 Hb_007654_010--Hb_007951_080 Hb_006655_040 Hb_006655_040 Hb_000809_070--Hb_006655_040 Hb_003095_090 Hb_003095_090 Hb_000809_070--Hb_003095_090 Hb_132330_010 Hb_132330_010 Hb_000809_070--Hb_132330_010 Hb_000809_070--Hb_027028_010 Hb_003850_030 Hb_003850_030 Hb_000809_070--Hb_003850_030 Hb_001789_010 Hb_001789_010 Hb_007645_110--Hb_001789_010 Hb_142734_020 Hb_142734_020 Hb_007645_110--Hb_142734_020 Hb_002553_100 Hb_002553_100 Hb_007645_110--Hb_002553_100 Hb_000705_100 Hb_000705_100 Hb_007645_110--Hb_000705_100 Hb_174514_010 Hb_174514_010 Hb_007645_110--Hb_174514_010 Hb_003626_010--Hb_003095_090 Hb_002791_040 Hb_002791_040 Hb_003626_010--Hb_002791_040 Hb_001190_050 Hb_001190_050 Hb_003626_010--Hb_001190_050 Hb_003626_010--Hb_006655_040 Hb_008014_060 Hb_008014_060 Hb_003626_010--Hb_008014_060 Hb_027028_010--Hb_003119_120 Hb_003549_010 Hb_003549_010 Hb_027028_010--Hb_003549_010 Hb_000679_280 Hb_000679_280 Hb_027028_010--Hb_000679_280 Hb_000552_030 Hb_000552_030 Hb_027028_010--Hb_000552_030 Hb_027028_010--Hb_173764_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0580725 1.20192 0.0628165 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.103072 0 0.556321 0

CAGE analysis