Hb_003850_030

Information

Type -
Description -
Location Contig3850: 37997-40978
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa016115mg
description hypothetical protein
nr
ID XP_007224141.1
description hypothetical protein PRUPE_ppa016115mg [Prunus persica]
swissprot
ID A1Z651
description Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=1 SV=1
trembl
ID M5Y103
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016115mg PE=4 SV=1
Gene Ontology
ID GO:0043231
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003850_030 0.0 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
2 Hb_001743_080 0.0091028883 - - -
3 Hb_132330_010 0.0144519522 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001189_160 0.0224685042 - - -
5 Hb_003294_080 0.0390044222 - - -
6 Hb_185532_010 0.0434238338 - - hypothetical protein POPTR_0006s25570g [Populus trichocarpa]
7 Hb_073973_040 0.0474152061 - - PREDICTED: uncharacterized protein LOC103941330 [Pyrus x bretschneideri]
8 Hb_000123_130 0.0487182695 - - hypothetical protein POPTR_0008s05200g, partial [Populus trichocarpa]
9 Hb_002233_180 0.0508555429 - - -
10 Hb_005503_020 0.0526320115 - - Hypothetical protein glysoja_025074 [Glycine soja]
11 Hb_002415_010 0.0529222093 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
12 Hb_158467_020 0.0534002115 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
13 Hb_003848_050 0.0555629161 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
14 Hb_004017_020 0.0562091619 - - Squalene monooxygenase, putative [Ricinus communis]
15 Hb_021943_010 0.0575376507 - - -
16 Hb_027468_010 0.0599998341 - - kinase, putative [Ricinus communis]
17 Hb_001581_030 0.0602885728 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
18 Hb_000212_200 0.0605001838 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
19 Hb_004028_010 0.0617309049 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_005062_090 0.0635329336 - - ferredoxin [Vibrio natriegens]

Gene co-expression network

sample Hb_003850_030 Hb_003850_030 Hb_001743_080 Hb_001743_080 Hb_003850_030--Hb_001743_080 Hb_132330_010 Hb_132330_010 Hb_003850_030--Hb_132330_010 Hb_001189_160 Hb_001189_160 Hb_003850_030--Hb_001189_160 Hb_003294_080 Hb_003294_080 Hb_003850_030--Hb_003294_080 Hb_185532_010 Hb_185532_010 Hb_003850_030--Hb_185532_010 Hb_073973_040 Hb_073973_040 Hb_003850_030--Hb_073973_040 Hb_001743_080--Hb_001189_160 Hb_001743_080--Hb_132330_010 Hb_001743_080--Hb_003294_080 Hb_001743_080--Hb_185532_010 Hb_001743_080--Hb_073973_040 Hb_132330_010--Hb_003294_080 Hb_132330_010--Hb_185532_010 Hb_132330_010--Hb_073973_040 Hb_000123_130 Hb_000123_130 Hb_132330_010--Hb_000123_130 Hb_001189_160--Hb_132330_010 Hb_000349_130 Hb_000349_130 Hb_001189_160--Hb_000349_130 Hb_001240_030 Hb_001240_030 Hb_001189_160--Hb_001240_030 Hb_002326_160 Hb_002326_160 Hb_001189_160--Hb_002326_160 Hb_003294_080--Hb_185532_010 Hb_003294_080--Hb_073973_040 Hb_003294_080--Hb_000123_130 Hb_002233_180 Hb_002233_180 Hb_003294_080--Hb_002233_180 Hb_005503_020 Hb_005503_020 Hb_003294_080--Hb_005503_020 Hb_002415_010 Hb_002415_010 Hb_003294_080--Hb_002415_010 Hb_185532_010--Hb_073973_040 Hb_185532_010--Hb_000123_130 Hb_185532_010--Hb_002233_180 Hb_185532_010--Hb_005503_020 Hb_185532_010--Hb_002415_010 Hb_073973_040--Hb_000123_130 Hb_073973_040--Hb_002233_180 Hb_073973_040--Hb_005503_020 Hb_073973_040--Hb_002415_010 Hb_158467_020 Hb_158467_020 Hb_073973_040--Hb_158467_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.017469 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0107643 0

CAGE analysis