Hb_000123_130

Information

Type -
Description -
Location Contig123: 95160-97870
Sequence    

Annotation

kegg
ID pop:POPTR_0008s05200g
description POPTRDRAFT_656060; hypothetical protein
nr
ID XP_002311153.2
description hypothetical protein POPTR_0008s05200g, partial [Populus trichocarpa]
swissprot
ID Q9LT67
description Transcription factor bHLH113 OS=Arabidopsis thaliana GN=BHLH113 PE=2 SV=1
trembl
ID B9HM62
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0008s05200g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_130 0.0 - - hypothetical protein POPTR_0008s05200g, partial [Populus trichocarpa]
2 Hb_073973_040 0.0013043298 - - PREDICTED: uncharacterized protein LOC103941330 [Pyrus x bretschneideri]
3 Hb_002233_180 0.0021395085 - - -
4 Hb_005503_020 0.0039179851 - - Hypothetical protein glysoja_025074 [Glycine soja]
5 Hb_002415_010 0.0042085239 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
6 Hb_158467_020 0.0046870959 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
7 Hb_185532_010 0.0052991299 - - hypothetical protein POPTR_0006s25570g [Populus trichocarpa]
8 Hb_003848_050 0.0068525028 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
9 Hb_004017_020 0.0074995958 - - Squalene monooxygenase, putative [Ricinus communis]
10 Hb_021943_010 0.0088298839 - - -
11 Hb_003294_080 0.0097215512 - - -
12 Hb_027468_010 0.0112956082 - - kinase, putative [Ricinus communis]
13 Hb_001581_030 0.0115847798 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
14 Hb_000212_200 0.0117967104 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
15 Hb_004028_010 0.0130293297 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_005062_090 0.01483426 - - ferredoxin [Vibrio natriegens]
17 Hb_132330_010 0.0342761637 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000230_350 0.0485958312 - - PREDICTED: uncharacterized protein LOC105630371 [Jatropha curcas]
19 Hb_003850_030 0.0487182695 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
20 Hb_001743_080 0.0578109021 - - -

Gene co-expression network

sample Hb_000123_130 Hb_000123_130 Hb_073973_040 Hb_073973_040 Hb_000123_130--Hb_073973_040 Hb_002233_180 Hb_002233_180 Hb_000123_130--Hb_002233_180 Hb_005503_020 Hb_005503_020 Hb_000123_130--Hb_005503_020 Hb_002415_010 Hb_002415_010 Hb_000123_130--Hb_002415_010 Hb_158467_020 Hb_158467_020 Hb_000123_130--Hb_158467_020 Hb_185532_010 Hb_185532_010 Hb_000123_130--Hb_185532_010 Hb_073973_040--Hb_002233_180 Hb_073973_040--Hb_185532_010 Hb_073973_040--Hb_005503_020 Hb_073973_040--Hb_002415_010 Hb_073973_040--Hb_158467_020 Hb_002233_180--Hb_005503_020 Hb_002233_180--Hb_002415_010 Hb_002233_180--Hb_158467_020 Hb_003848_050 Hb_003848_050 Hb_002233_180--Hb_003848_050 Hb_005503_020--Hb_002415_010 Hb_005503_020--Hb_158467_020 Hb_005503_020--Hb_003848_050 Hb_004017_020 Hb_004017_020 Hb_005503_020--Hb_004017_020 Hb_002415_010--Hb_158467_020 Hb_002415_010--Hb_003848_050 Hb_002415_010--Hb_004017_020 Hb_158467_020--Hb_003848_050 Hb_158467_020--Hb_004017_020 Hb_021943_010 Hb_021943_010 Hb_158467_020--Hb_021943_010 Hb_003294_080 Hb_003294_080 Hb_185532_010--Hb_003294_080 Hb_185532_010--Hb_002233_180 Hb_185532_010--Hb_005503_020 Hb_185532_010--Hb_002415_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0373907 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0181203 0

CAGE analysis