Hb_004017_020

Information

Type -
Description -
Location Contig4017: 45951-52129
Sequence    

Annotation

kegg
ID rcu:RCOM_0402510
description Squalene monooxygenase, putative (EC:1.14.99.7)
nr
ID XP_002531902.1
description Squalene monooxygenase, putative [Ricinus communis]
swissprot
ID O81000
description Squalene epoxidase 2, mitochondrial OS=Arabidopsis thaliana GN=SQE2 PE=1 SV=1
trembl
ID B9T0Y3
description Squalene monooxygenase, putative OS=Ricinus communis GN=RCOM_0402510 PE=4 SV=1
Gene Ontology
ID GO:0016021
description squalene monooxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004017_020 0.0 - - Squalene monooxygenase, putative [Ricinus communis]
2 Hb_003848_050 0.000647108 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
3 Hb_021943_010 0.0013303277 - - -
4 Hb_158467_020 0.0028125441 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
5 Hb_002415_010 0.0032911183 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
6 Hb_005503_020 0.0035816577 - - Hypothetical protein glysoja_025074 [Glycine soja]
7 Hb_027468_010 0.0037961573 - - kinase, putative [Ricinus communis]
8 Hb_001581_030 0.0040853439 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
9 Hb_000212_200 0.0042972859 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
10 Hb_002233_180 0.0053601257 - - -
11 Hb_004028_010 0.0055299777 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_005062_090 0.0073350331 - - ferredoxin [Vibrio natriegens]
13 Hb_000123_130 0.0074995958 - - hypothetical protein POPTR_0008s05200g, partial [Populus trichocarpa]
14 Hb_073973_040 0.0088038873 - - PREDICTED: uncharacterized protein LOC103941330 [Pyrus x bretschneideri]
15 Hb_185532_010 0.0127985006 - - hypothetical protein POPTR_0006s25570g [Populus trichocarpa]
16 Hb_003294_080 0.0172205939 - - -
17 Hb_000230_350 0.0411032679 - - PREDICTED: uncharacterized protein LOC105630371 [Jatropha curcas]
18 Hb_132330_010 0.0417711449 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003850_030 0.0562091619 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
20 Hb_001743_080 0.0652986026 - - -

Gene co-expression network

sample Hb_004017_020 Hb_004017_020 Hb_003848_050 Hb_003848_050 Hb_004017_020--Hb_003848_050 Hb_021943_010 Hb_021943_010 Hb_004017_020--Hb_021943_010 Hb_158467_020 Hb_158467_020 Hb_004017_020--Hb_158467_020 Hb_002415_010 Hb_002415_010 Hb_004017_020--Hb_002415_010 Hb_005503_020 Hb_005503_020 Hb_004017_020--Hb_005503_020 Hb_027468_010 Hb_027468_010 Hb_004017_020--Hb_027468_010 Hb_003848_050--Hb_021943_010 Hb_003848_050--Hb_158467_020 Hb_003848_050--Hb_002415_010 Hb_003848_050--Hb_005503_020 Hb_003848_050--Hb_027468_010 Hb_021943_010--Hb_027468_010 Hb_001581_030 Hb_001581_030 Hb_021943_010--Hb_001581_030 Hb_000212_200 Hb_000212_200 Hb_021943_010--Hb_000212_200 Hb_021943_010--Hb_158467_020 Hb_158467_020--Hb_002415_010 Hb_158467_020--Hb_005503_020 Hb_002233_180 Hb_002233_180 Hb_158467_020--Hb_002233_180 Hb_002415_010--Hb_005503_020 Hb_002415_010--Hb_002233_180 Hb_000123_130 Hb_000123_130 Hb_002415_010--Hb_000123_130 Hb_005503_020--Hb_002233_180 Hb_005503_020--Hb_000123_130 Hb_027468_010--Hb_001581_030 Hb_027468_010--Hb_000212_200 Hb_004028_010 Hb_004028_010 Hb_027468_010--Hb_004028_010 Hb_005062_090 Hb_005062_090 Hb_027468_010--Hb_005062_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0288583 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0134667 0

CAGE analysis