Hb_005062_090

Information

Type -
Description -
Location Contig5062: 78003-78281
Sequence    

Annotation

kegg
ID -
description -
nr
ID WP_020333379.1
description ferredoxin [Vibrio natriegens]
swissprot
ID -
description -
trembl
ID H2IFG6
description Ferredoxin OS=Vibrio sp. (strain EJY3) GN=VEJY3_15105 PE=4 SV=1
Gene Ontology
ID GO:0009055
description ferredoxin- chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005062_090 0.0 - - ferredoxin [Vibrio natriegens]
2 Hb_004028_010 0.0018050889 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_000212_200 0.003037791 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
4 Hb_001581_030 0.0032497338 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
5 Hb_027468_010 0.0035389209 - - kinase, putative [Ricinus communis]
6 Hb_021943_010 0.0060047321 - - -
7 Hb_004017_020 0.0073350331 - - Squalene monooxygenase, putative [Ricinus communis]
8 Hb_003848_050 0.0079821238 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
9 Hb_158467_020 0.0101474821 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
10 Hb_002415_010 0.0106260349 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
11 Hb_005503_020 0.0109165606 - - Hypothetical protein glysoja_025074 [Glycine soja]
12 Hb_002233_180 0.0126949326 - - -
13 Hb_000123_130 0.01483426 - - hypothetical protein POPTR_0008s05200g, partial [Populus trichocarpa]
14 Hb_073973_040 0.0161384499 - - PREDICTED: uncharacterized protein LOC103941330 [Pyrus x bretschneideri]
15 Hb_185532_010 0.0201326841 - - hypothetical protein POPTR_0006s25570g [Populus trichocarpa]
16 Hb_003294_080 0.0245542393 - - -
17 Hb_000230_350 0.0337730984 - - PREDICTED: uncharacterized protein LOC105630371 [Jatropha curcas]
18 Hb_132330_010 0.0490996165 - - conserved hypothetical protein [Ricinus communis]
19 Hb_105767_020 0.0627301975 - - -
20 Hb_003850_030 0.0635329336 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]

Gene co-expression network

sample Hb_005062_090 Hb_005062_090 Hb_004028_010 Hb_004028_010 Hb_005062_090--Hb_004028_010 Hb_000212_200 Hb_000212_200 Hb_005062_090--Hb_000212_200 Hb_001581_030 Hb_001581_030 Hb_005062_090--Hb_001581_030 Hb_027468_010 Hb_027468_010 Hb_005062_090--Hb_027468_010 Hb_021943_010 Hb_021943_010 Hb_005062_090--Hb_021943_010 Hb_004017_020 Hb_004017_020 Hb_005062_090--Hb_004017_020 Hb_004028_010--Hb_000212_200 Hb_004028_010--Hb_001581_030 Hb_004028_010--Hb_027468_010 Hb_004028_010--Hb_021943_010 Hb_004028_010--Hb_004017_020 Hb_000212_200--Hb_001581_030 Hb_000212_200--Hb_027468_010 Hb_000212_200--Hb_021943_010 Hb_000212_200--Hb_004017_020 Hb_001581_030--Hb_027468_010 Hb_001581_030--Hb_021943_010 Hb_001581_030--Hb_004017_020 Hb_027468_010--Hb_021943_010 Hb_027468_010--Hb_004017_020 Hb_021943_010--Hb_004017_020 Hb_003848_050 Hb_003848_050 Hb_021943_010--Hb_003848_050 Hb_158467_020 Hb_158467_020 Hb_021943_010--Hb_158467_020 Hb_004017_020--Hb_003848_050 Hb_004017_020--Hb_158467_020 Hb_002415_010 Hb_002415_010 Hb_004017_020--Hb_002415_010 Hb_005503_020 Hb_005503_020 Hb_004017_020--Hb_005503_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.370996 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.166801 0

CAGE analysis