Hb_002415_010

Information

Type -
Description -
Location Contig2415: 38275-42339
Sequence    

Annotation

kegg
ID cmo:103497645
description uncharacterized LOC103497645
nr
ID XP_012453215.1
description PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0N6N9
description Maturase K OS=Gossypium arboreum GN=F383_34274 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002415_010 0.0 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
2 Hb_005503_020 0.0002905409 - - Hypothetical protein glysoja_025074 [Glycine soja]
3 Hb_158467_020 0.0004785762 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
4 Hb_002233_180 0.0020690237 - - -
5 Hb_003848_050 0.0026440129 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
6 Hb_004017_020 0.0032911183 - - Squalene monooxygenase, putative [Ricinus communis]
7 Hb_000123_130 0.0042085239 - - hypothetical protein POPTR_0008s05200g, partial [Populus trichocarpa]
8 Hb_021943_010 0.0046214369 - - -
9 Hb_073973_040 0.0055128403 - - PREDICTED: uncharacterized protein LOC103941330 [Pyrus x bretschneideri]
10 Hb_027468_010 0.0070872355 - - kinase, putative [Ricinus communis]
11 Hb_001581_030 0.0073764173 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
12 Hb_000212_200 0.0075883557 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
13 Hb_004028_010 0.0088210233 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_185532_010 0.0095075603 - - hypothetical protein POPTR_0006s25570g [Populus trichocarpa]
15 Hb_005062_090 0.0106260349 - - ferredoxin [Vibrio natriegens]
16 Hb_003294_080 0.0139298249 - - -
17 Hb_132330_010 0.0384823096 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000230_350 0.0443915534 - - PREDICTED: uncharacterized protein LOC105630371 [Jatropha curcas]
19 Hb_003850_030 0.0529222093 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
20 Hb_001743_080 0.062013106 - - -

Gene co-expression network

sample Hb_002415_010 Hb_002415_010 Hb_005503_020 Hb_005503_020 Hb_002415_010--Hb_005503_020 Hb_158467_020 Hb_158467_020 Hb_002415_010--Hb_158467_020 Hb_002233_180 Hb_002233_180 Hb_002415_010--Hb_002233_180 Hb_003848_050 Hb_003848_050 Hb_002415_010--Hb_003848_050 Hb_004017_020 Hb_004017_020 Hb_002415_010--Hb_004017_020 Hb_000123_130 Hb_000123_130 Hb_002415_010--Hb_000123_130 Hb_005503_020--Hb_158467_020 Hb_005503_020--Hb_002233_180 Hb_005503_020--Hb_003848_050 Hb_005503_020--Hb_004017_020 Hb_005503_020--Hb_000123_130 Hb_158467_020--Hb_003848_050 Hb_158467_020--Hb_002233_180 Hb_158467_020--Hb_004017_020 Hb_021943_010 Hb_021943_010 Hb_158467_020--Hb_021943_010 Hb_002233_180--Hb_000123_130 Hb_073973_040 Hb_073973_040 Hb_002233_180--Hb_073973_040 Hb_002233_180--Hb_003848_050 Hb_003848_050--Hb_004017_020 Hb_003848_050--Hb_021943_010 Hb_027468_010 Hb_027468_010 Hb_003848_050--Hb_027468_010 Hb_004017_020--Hb_021943_010 Hb_004017_020--Hb_027468_010 Hb_000123_130--Hb_073973_040 Hb_000123_130--Hb_158467_020 Hb_185532_010 Hb_185532_010 Hb_000123_130--Hb_185532_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0582401 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.027633 0

CAGE analysis