Hb_185532_010

Information

Type -
Description -
Location Contig185532: 402-828
Sequence    

Annotation

kegg
ID pop:POPTR_0006s25570g
description POPTRDRAFT_763350; hypothetical protein
nr
ID XP_002308605.1
description hypothetical protein POPTR_0006s25570g [Populus trichocarpa]
swissprot
ID Q53353
description Lignostilbene-alpha,beta-dioxygenase isozyme I OS=Sphingomonas paucimobilis PE=1 SV=1
trembl
ID B9H8Z8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25570g PE=4 SV=1
Gene Ontology
ID GO:0051213
description carotenoid (9 )-cleavage dioxygenase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185532_010 0.0 - - hypothetical protein POPTR_0006s25570g [Populus trichocarpa]
2 Hb_073973_040 0.0039948123 - - PREDICTED: uncharacterized protein LOC103941330 [Pyrus x bretschneideri]
3 Hb_003294_080 0.0044225204 - - -
4 Hb_000123_130 0.0052991299 - - hypothetical protein POPTR_0008s05200g, partial [Populus trichocarpa]
5 Hb_002233_180 0.0074386012 - - -
6 Hb_005503_020 0.0092170306 - - Hypothetical protein glysoja_025074 [Glycine soja]
7 Hb_002415_010 0.0095075603 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
8 Hb_158467_020 0.0099861164 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
9 Hb_003848_050 0.0121514375 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
10 Hb_004017_020 0.0127985006 - - Squalene monooxygenase, putative [Ricinus communis]
11 Hb_021943_010 0.0141287209 - - -
12 Hb_027468_010 0.0165942968 - - kinase, putative [Ricinus communis]
13 Hb_001581_030 0.016883449 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
14 Hb_000212_200 0.0170953652 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
15 Hb_004028_010 0.0183278963 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_005062_090 0.0201326841 - - ferredoxin [Vibrio natriegens]
17 Hb_132330_010 0.028979268 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003850_030 0.0434238338 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
19 Hb_001743_080 0.0525184532 - - -
20 Hb_000230_350 0.0538885406 - - PREDICTED: uncharacterized protein LOC105630371 [Jatropha curcas]

Gene co-expression network

sample Hb_185532_010 Hb_185532_010 Hb_073973_040 Hb_073973_040 Hb_185532_010--Hb_073973_040 Hb_003294_080 Hb_003294_080 Hb_185532_010--Hb_003294_080 Hb_000123_130 Hb_000123_130 Hb_185532_010--Hb_000123_130 Hb_002233_180 Hb_002233_180 Hb_185532_010--Hb_002233_180 Hb_005503_020 Hb_005503_020 Hb_185532_010--Hb_005503_020 Hb_002415_010 Hb_002415_010 Hb_185532_010--Hb_002415_010 Hb_073973_040--Hb_000123_130 Hb_073973_040--Hb_002233_180 Hb_073973_040--Hb_005503_020 Hb_073973_040--Hb_002415_010 Hb_158467_020 Hb_158467_020 Hb_073973_040--Hb_158467_020 Hb_003294_080--Hb_073973_040 Hb_003294_080--Hb_000123_130 Hb_003294_080--Hb_002233_180 Hb_003294_080--Hb_005503_020 Hb_003294_080--Hb_002415_010 Hb_000123_130--Hb_002233_180 Hb_000123_130--Hb_005503_020 Hb_000123_130--Hb_002415_010 Hb_000123_130--Hb_158467_020 Hb_002233_180--Hb_005503_020 Hb_002233_180--Hb_002415_010 Hb_002233_180--Hb_158467_020 Hb_003848_050 Hb_003848_050 Hb_002233_180--Hb_003848_050 Hb_005503_020--Hb_002415_010 Hb_005503_020--Hb_158467_020 Hb_005503_020--Hb_003848_050 Hb_004017_020 Hb_004017_020 Hb_005503_020--Hb_004017_020 Hb_002415_010--Hb_158467_020 Hb_002415_010--Hb_003848_050 Hb_002415_010--Hb_004017_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.189849 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0944803 0

CAGE analysis