Hb_021943_010

Information

Type -
Description -
Location Contig21943: 4158-5432
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021943_010 0.0 - - -
2 Hb_004017_020 0.0013303277 - - Squalene monooxygenase, putative [Ricinus communis]
3 Hb_003848_050 0.0019774349 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
4 Hb_027468_010 0.0024658352 - - kinase, putative [Ricinus communis]
5 Hb_001581_030 0.002755023 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
6 Hb_000212_200 0.002966966 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
7 Hb_158467_020 0.0041428648 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
8 Hb_004028_010 0.0041996641 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_002415_010 0.0046214369 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
10 Hb_005503_020 0.0049119749 - - Hypothetical protein glysoja_025074 [Glycine soja]
11 Hb_005062_090 0.0060047321 - - ferredoxin [Vibrio natriegens]
12 Hb_002233_180 0.0066904319 - - -
13 Hb_000123_130 0.0088298839 - - hypothetical protein POPTR_0008s05200g, partial [Populus trichocarpa]
14 Hb_073973_040 0.0101341618 - - PREDICTED: uncharacterized protein LOC103941330 [Pyrus x bretschneideri]
15 Hb_185532_010 0.0141287209 - - hypothetical protein POPTR_0006s25570g [Populus trichocarpa]
16 Hb_003294_080 0.0185507327 - - -
17 Hb_000230_350 0.0397739718 - - PREDICTED: uncharacterized protein LOC105630371 [Jatropha curcas]
18 Hb_132330_010 0.0431004343 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003850_030 0.0575376507 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
20 Hb_001743_080 0.0666264781 - - -

Gene co-expression network

sample Hb_021943_010 Hb_021943_010 Hb_004017_020 Hb_004017_020 Hb_021943_010--Hb_004017_020 Hb_003848_050 Hb_003848_050 Hb_021943_010--Hb_003848_050 Hb_027468_010 Hb_027468_010 Hb_021943_010--Hb_027468_010 Hb_001581_030 Hb_001581_030 Hb_021943_010--Hb_001581_030 Hb_000212_200 Hb_000212_200 Hb_021943_010--Hb_000212_200 Hb_158467_020 Hb_158467_020 Hb_021943_010--Hb_158467_020 Hb_004017_020--Hb_003848_050 Hb_004017_020--Hb_158467_020 Hb_002415_010 Hb_002415_010 Hb_004017_020--Hb_002415_010 Hb_005503_020 Hb_005503_020 Hb_004017_020--Hb_005503_020 Hb_004017_020--Hb_027468_010 Hb_003848_050--Hb_158467_020 Hb_003848_050--Hb_002415_010 Hb_003848_050--Hb_005503_020 Hb_003848_050--Hb_027468_010 Hb_027468_010--Hb_001581_030 Hb_027468_010--Hb_000212_200 Hb_004028_010 Hb_004028_010 Hb_027468_010--Hb_004028_010 Hb_005062_090 Hb_005062_090 Hb_027468_010--Hb_005062_090 Hb_001581_030--Hb_000212_200 Hb_001581_030--Hb_004028_010 Hb_001581_030--Hb_005062_090 Hb_001581_030--Hb_004017_020 Hb_000212_200--Hb_004028_010 Hb_000212_200--Hb_005062_090 Hb_000212_200--Hb_004017_020 Hb_158467_020--Hb_002415_010 Hb_158467_020--Hb_005503_020 Hb_002233_180 Hb_002233_180 Hb_158467_020--Hb_002233_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.081799 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0379154 0

CAGE analysis