Hb_000212_200

Information

Type -
Description -
Location Contig212: 235123-236395
Sequence    

Annotation

kegg
ID rcu:RCOM_1077560
description ATP binding protein, putative
nr
ID XP_012085907.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
swissprot
ID Q9SCX7
description Inactive disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=3 SV=1
trembl
ID B9RM36
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1077560 PE=4 SV=1
Gene Ontology
ID GO:0032550
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_200 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
2 Hb_001581_030 0.0002119438 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
3 Hb_027468_010 0.0005011324 - - kinase, putative [Ricinus communis]
4 Hb_004028_010 0.0012327052 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_021943_010 0.002966966 - - -
6 Hb_005062_090 0.003037791 - - ferredoxin [Vibrio natriegens]
7 Hb_004017_020 0.0042972859 - - Squalene monooxygenase, putative [Ricinus communis]
8 Hb_003848_050 0.0049443877 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
9 Hb_158467_020 0.0071097911 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
10 Hb_002415_010 0.0075883557 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
11 Hb_005503_020 0.0078788888 - - Hypothetical protein glysoja_025074 [Glycine soja]
12 Hb_002233_180 0.0096573112 - - -
13 Hb_000123_130 0.0117967104 - - hypothetical protein POPTR_0008s05200g, partial [Populus trichocarpa]
14 Hb_073973_040 0.0131009502 - - PREDICTED: uncharacterized protein LOC103941330 [Pyrus x bretschneideri]
15 Hb_185532_010 0.0170953652 - - hypothetical protein POPTR_0006s25570g [Populus trichocarpa]
16 Hb_003294_080 0.0215171697 - - -
17 Hb_000230_350 0.0368090764 - - PREDICTED: uncharacterized protein LOC105630371 [Jatropha curcas]
18 Hb_132330_010 0.0460648354 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003850_030 0.0605001838 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
20 Hb_105767_020 0.0657617577 - - -

Gene co-expression network

sample Hb_000212_200 Hb_000212_200 Hb_001581_030 Hb_001581_030 Hb_000212_200--Hb_001581_030 Hb_027468_010 Hb_027468_010 Hb_000212_200--Hb_027468_010 Hb_004028_010 Hb_004028_010 Hb_000212_200--Hb_004028_010 Hb_021943_010 Hb_021943_010 Hb_000212_200--Hb_021943_010 Hb_005062_090 Hb_005062_090 Hb_000212_200--Hb_005062_090 Hb_004017_020 Hb_004017_020 Hb_000212_200--Hb_004017_020 Hb_001581_030--Hb_027468_010 Hb_001581_030--Hb_004028_010 Hb_001581_030--Hb_021943_010 Hb_001581_030--Hb_005062_090 Hb_001581_030--Hb_004017_020 Hb_027468_010--Hb_004028_010 Hb_027468_010--Hb_021943_010 Hb_027468_010--Hb_005062_090 Hb_027468_010--Hb_004017_020 Hb_004028_010--Hb_005062_090 Hb_004028_010--Hb_021943_010 Hb_004028_010--Hb_004017_020 Hb_021943_010--Hb_004017_020 Hb_003848_050 Hb_003848_050 Hb_021943_010--Hb_003848_050 Hb_158467_020 Hb_158467_020 Hb_021943_010--Hb_158467_020 Hb_005062_090--Hb_021943_010 Hb_005062_090--Hb_004017_020 Hb_004017_020--Hb_003848_050 Hb_004017_020--Hb_158467_020 Hb_002415_010 Hb_002415_010 Hb_004017_020--Hb_002415_010 Hb_005503_020 Hb_005503_020 Hb_004017_020--Hb_005503_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0291798 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0133235 0

CAGE analysis