Hb_003626_010

Information

Type -
Description -
Location Contig3626: 5670-5981
Sequence    

Annotation

kegg
ID rcu:RCOM_1049910
description hypothetical protein
nr
ID KDP33807.1
description hypothetical protein JCGZ_07378 [Jatropha curcas]
swissprot
ID Q7ZW78
description E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2 SV=2
trembl
ID A0A067KCF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07378 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003626_010 0.0 - - hypothetical protein JCGZ_07378 [Jatropha curcas]
2 Hb_007451_080 0.2322559867 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
3 Hb_003095_090 0.2441667324 - - hypothetical protein JCGZ_10029 [Jatropha curcas]
4 Hb_002791_040 0.2587439463 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_001190_050 0.2622447034 - - hypothetical protein JCGZ_20709 [Jatropha curcas]
6 Hb_006655_040 0.2740336703 - - tau class glutathione transferase GSTU15 [Populus trichocarpa]
7 Hb_008014_060 0.2907806041 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
8 Hb_001391_120 0.298092773 - - Acetyl esterase, putative [Ricinus communis]
9 Hb_002374_500 0.3161647912 - - PREDICTED: putative F-box protein PP2-B12 [Gossypium raimondii]
10 Hb_000809_070 0.3184981689 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 36-like [Jatropha curcas]
11 Hb_001798_020 0.3235312832 - - PREDICTED: uncharacterized protein LOC104594032 [Nelumbo nucifera]
12 Hb_007645_110 0.3311771747 transcription factor TF Family: ERF hypothetical protein RCOM_0089590 [Ricinus communis]
13 Hb_024898_020 0.3337391946 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_142734_020 0.3427503575 - - PREDICTED: uncharacterized protein LOC105764710 isoform X1 [Gossypium raimondii]
15 Hb_007654_010 0.3474087676 - - valacyclovir hydrolase, putative [Ricinus communis]
16 Hb_020178_010 0.3496911009 transcription factor TF Family: MYB-related PREDICTED: myb-related protein A-like [Jatropha curcas]
17 Hb_001104_050 0.3519190743 - - -
18 Hb_000402_110 0.3540095781 - - hypothetical protein JCGZ_17786 [Jatropha curcas]
19 Hb_001379_050 0.3557484659 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001743_080 0.3624304636 - - -

Gene co-expression network

sample Hb_003626_010 Hb_003626_010 Hb_007451_080 Hb_007451_080 Hb_003626_010--Hb_007451_080 Hb_003095_090 Hb_003095_090 Hb_003626_010--Hb_003095_090 Hb_002791_040 Hb_002791_040 Hb_003626_010--Hb_002791_040 Hb_001190_050 Hb_001190_050 Hb_003626_010--Hb_001190_050 Hb_006655_040 Hb_006655_040 Hb_003626_010--Hb_006655_040 Hb_008014_060 Hb_008014_060 Hb_003626_010--Hb_008014_060 Hb_002805_260 Hb_002805_260 Hb_007451_080--Hb_002805_260 Hb_007654_010 Hb_007654_010 Hb_007451_080--Hb_007654_010 Hb_000809_070 Hb_000809_070 Hb_007451_080--Hb_000809_070 Hb_007645_110 Hb_007645_110 Hb_007451_080--Hb_007645_110 Hb_027028_010 Hb_027028_010 Hb_007451_080--Hb_027028_010 Hb_002374_500 Hb_002374_500 Hb_003095_090--Hb_002374_500 Hb_005316_010 Hb_005316_010 Hb_003095_090--Hb_005316_010 Hb_000022_210 Hb_000022_210 Hb_003095_090--Hb_000022_210 Hb_002671_070 Hb_002671_070 Hb_003095_090--Hb_002671_070 Hb_005946_130 Hb_005946_130 Hb_003095_090--Hb_005946_130 Hb_001048_120 Hb_001048_120 Hb_003095_090--Hb_001048_120 Hb_002791_040--Hb_001190_050 Hb_002791_040--Hb_008014_060 Hb_000069_580 Hb_000069_580 Hb_002791_040--Hb_000069_580 Hb_008221_020 Hb_008221_020 Hb_002791_040--Hb_008221_020 Hb_002435_020 Hb_002435_020 Hb_002791_040--Hb_002435_020 Hb_001190_050--Hb_008014_060 Hb_001190_050--Hb_000069_580 Hb_001190_050--Hb_008221_020 Hb_001190_050--Hb_002435_020 Hb_006655_040--Hb_000809_070 Hb_006655_040--Hb_003095_090 Hb_160246_010 Hb_160246_010 Hb_006655_040--Hb_160246_010 Hb_006655_040--Hb_007451_080 Hb_006655_040--Hb_002374_500 Hb_001246_050 Hb_001246_050 Hb_008014_060--Hb_001246_050 Hb_008014_060--Hb_008221_020 Hb_008014_060--Hb_000069_580 Hb_000025_390 Hb_000025_390 Hb_008014_060--Hb_000025_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.16092 1.35042 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.5348 0 0.862448 0

CAGE analysis