Hb_000022_210

Information

Type -
Description -
Location Contig22: 321109-322432
Sequence    

Annotation

kegg
ID tcc:TCM_037124
description Polyamine-modulated factor 1-binding protein 1
nr
ID XP_012077574.1
description PREDICTED: uncharacterized protein LOC105638395 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07806 PE=4 SV=1
Gene Ontology
ID GO:0005634
description polyamine-modulated factor 1-binding protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000022_210 0.0 - - PREDICTED: uncharacterized protein LOC105638395 [Jatropha curcas]
2 Hb_009398_010 0.035228918 - - Putative pectate lyase 2 [Glycine soja]
3 Hb_002289_030 0.0365333439 - - PREDICTED: uncharacterized protein LOC103957017 [Pyrus x bretschneideri]
4 Hb_005204_060 0.0448639817 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_002094_060 0.0460789451 - - -
6 Hb_184964_010 0.0470444653 - - -
7 Hb_004324_140 0.0477665494 - - PREDICTED: uncharacterized protein LOC105648358 [Jatropha curcas]
8 Hb_000905_020 0.0509326602 - - PREDICTED: cytochrome P450 93A2-like [Jatropha curcas]
9 Hb_005316_010 0.0573255749 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_000383_030 0.0604790546 - - -
11 Hb_005389_180 0.0624176083 - - PREDICTED: uncharacterized protein LOC105762407 [Gossypium raimondii]
12 Hb_002671_070 0.0825554933 - - hypothetical protein POPTR_0006s05220g, partial [Populus trichocarpa]
13 Hb_005946_130 0.0825554933 - - -
14 Hb_001048_120 0.0843881621 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
15 Hb_070810_010 0.0880848369 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
16 Hb_005625_030 0.088253477 - - ribosomal protein S12 (mitochondrion) [Chrysobalanus icaco]
17 Hb_009659_060 0.0901420647 - - cell wall invertase [Manihot esculenta]
18 Hb_000705_320 0.0912998087 - - Transcriptional regulator SUPERMAN, putative [Ricinus communis]
19 Hb_002659_020 0.0921668757 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
20 Hb_000345_090 0.0939812617 - - Cell cycle checkpoint control protein family isoform 5 [Theobroma cacao]

Gene co-expression network

sample Hb_000022_210 Hb_000022_210 Hb_009398_010 Hb_009398_010 Hb_000022_210--Hb_009398_010 Hb_002289_030 Hb_002289_030 Hb_000022_210--Hb_002289_030 Hb_005204_060 Hb_005204_060 Hb_000022_210--Hb_005204_060 Hb_002094_060 Hb_002094_060 Hb_000022_210--Hb_002094_060 Hb_184964_010 Hb_184964_010 Hb_000022_210--Hb_184964_010 Hb_004324_140 Hb_004324_140 Hb_000022_210--Hb_004324_140 Hb_009398_010--Hb_002289_030 Hb_009398_010--Hb_005204_060 Hb_009398_010--Hb_002094_060 Hb_009398_010--Hb_184964_010 Hb_009398_010--Hb_004324_140 Hb_000905_020 Hb_000905_020 Hb_009398_010--Hb_000905_020 Hb_002289_030--Hb_005204_060 Hb_002289_030--Hb_002094_060 Hb_002289_030--Hb_184964_010 Hb_002289_030--Hb_004324_140 Hb_002289_030--Hb_000905_020 Hb_005204_060--Hb_002094_060 Hb_005204_060--Hb_184964_010 Hb_005204_060--Hb_004324_140 Hb_005204_060--Hb_000905_020 Hb_002094_060--Hb_184964_010 Hb_002094_060--Hb_004324_140 Hb_002094_060--Hb_000905_020 Hb_184964_010--Hb_004324_140 Hb_184964_010--Hb_000905_020 Hb_004324_140--Hb_000905_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.298542 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.458214 0

CAGE analysis