Hb_002671_070

Information

Type -
Description -
Location Contig2671: 96006-96411
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05220g
description POPTRDRAFT_560534; hypothetical protein
nr
ID XP_002308962.2
description hypothetical protein POPTR_0006s05220g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H9X1
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s05220g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002671_070 0.0 - - hypothetical protein POPTR_0006s05220g, partial [Populus trichocarpa]
2 Hb_005946_130 0.0 - - -
3 Hb_001048_120 0.0018371642 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
4 Hb_070810_010 0.0055434892 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
5 Hb_005625_030 0.0057125882 - - ribosomal protein S12 (mitochondrion) [Chrysobalanus icaco]
6 Hb_000705_320 0.0087674867 - - Transcriptional regulator SUPERMAN, putative [Ricinus communis]
7 Hb_000345_090 0.0114569172 - - Cell cycle checkpoint control protein family isoform 5 [Theobroma cacao]
8 Hb_027556_050 0.0119580469 - - hypothetical protein PHAVU_001G166100g [Phaseolus vulgaris]
9 Hb_080359_020 0.0121226154 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
10 Hb_000724_010 0.0128267211 - - PREDICTED: uncharacterized protein LOC105134348 [Populus euphratica]
11 Hb_001031_100 0.0133424309 - - -
12 Hb_002596_100 0.014395514 - - -
13 Hb_003687_050 0.0145336779 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000441_240 0.0150777473 - - hypothetical protein ZEAMMB73_005804 [Zea mays]
15 Hb_001031_070 0.0152695826 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
16 Hb_071079_030 0.0156574941 transcription factor TF Family: MYB-related PREDICTED: transcription factor TRY-like [Populus euphratica]
17 Hb_000938_010 0.0169091272 - - polyprotein [Oryza australiensis]
18 Hb_159542_010 0.0194285468 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
19 Hb_000696_180 0.0208781011 - - cysteine protease, putative [Ricinus communis]
20 Hb_011444_050 0.0238795722 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]

Gene co-expression network

sample Hb_002671_070 Hb_002671_070 Hb_005946_130 Hb_005946_130 Hb_002671_070--Hb_005946_130 Hb_001048_120 Hb_001048_120 Hb_002671_070--Hb_001048_120 Hb_070810_010 Hb_070810_010 Hb_002671_070--Hb_070810_010 Hb_005625_030 Hb_005625_030 Hb_002671_070--Hb_005625_030 Hb_000705_320 Hb_000705_320 Hb_002671_070--Hb_000705_320 Hb_000345_090 Hb_000345_090 Hb_002671_070--Hb_000345_090 Hb_002671_070--Hb_005946_130 Hb_002671_070--Hb_001048_120 Hb_002671_070--Hb_070810_010 Hb_002671_070--Hb_005625_030 Hb_002671_070--Hb_000705_320 Hb_002671_070--Hb_000345_090 Hb_001048_120--Hb_005946_130 Hb_001048_120--Hb_070810_010 Hb_001048_120--Hb_005625_030 Hb_001048_120--Hb_000705_320 Hb_001048_120--Hb_000345_090 Hb_070810_010--Hb_005625_030 Hb_070810_010--Hb_000705_320 Hb_070810_010--Hb_005946_130 Hb_070810_010--Hb_000345_090 Hb_005625_030--Hb_000705_320 Hb_005625_030--Hb_005946_130 Hb_005625_030--Hb_000345_090 Hb_000705_320--Hb_000345_090 Hb_027556_050 Hb_027556_050 Hb_000705_320--Hb_027556_050 Hb_080359_020 Hb_080359_020 Hb_000705_320--Hb_080359_020 Hb_000724_010 Hb_000724_010 Hb_000705_320--Hb_000724_010 Hb_000345_090--Hb_027556_050 Hb_000345_090--Hb_080359_020 Hb_000345_090--Hb_000724_010 Hb_001031_100 Hb_001031_100 Hb_000345_090--Hb_001031_100 Hb_002596_100 Hb_002596_100 Hb_000345_090--Hb_002596_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0891555 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0924297 0

CAGE analysis