Hb_006655_040

Information

Type -
Description -
Location Contig6655: 69506-71385
Sequence    

Annotation

kegg
ID pmum:103339277
description probable glutathione S-transferase parA
nr
ID ADB11352.1
description tau class glutathione transferase GSTU15 [Populus trichocarpa]
swissprot
ID P25317
description Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1
trembl
ID D2X9R0
description Tau class glutathione transferase GSTU15 OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0004364
description probable glutathione s-transferase para

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53236: 69508-71361
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006655_040 0.0 - - tau class glutathione transferase GSTU15 [Populus trichocarpa]
2 Hb_000809_070 0.2594691733 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 36-like [Jatropha curcas]
3 Hb_003095_090 0.2667162927 - - hypothetical protein JCGZ_10029 [Jatropha curcas]
4 Hb_003626_010 0.2740336703 - - hypothetical protein JCGZ_07378 [Jatropha curcas]
5 Hb_160246_010 0.2785248951 - - calcium ion binding protein, putative [Ricinus communis]
6 Hb_007451_080 0.2905915159 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
7 Hb_002374_500 0.2997276727 - - PREDICTED: putative F-box protein PP2-B12 [Gossypium raimondii]
8 Hb_002701_160 0.3144420099 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
9 Hb_001691_220 0.3160997608 - - PREDICTED: uncharacterized protein LOC105649537 [Jatropha curcas]
10 Hb_002849_090 0.3162871245 - - hypothetical protein POPTR_0002s16380g [Populus trichocarpa]
11 Hb_000012_040 0.3175951806 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
12 Hb_003124_180 0.3234774366 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_002791_040 0.3250722726 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
14 Hb_024898_020 0.3277134508 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_001190_050 0.3287686404 - - hypothetical protein JCGZ_20709 [Jatropha curcas]
16 Hb_130498_010 0.3347427868 - - Laccase 17 [Theobroma cacao]
17 Hb_000094_240 0.3355168067 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
18 Hb_000112_100 0.3355885074 - - glutamate receptor 2 plant, putative [Ricinus communis]
19 Hb_020178_010 0.3372904925 transcription factor TF Family: MYB-related PREDICTED: myb-related protein A-like [Jatropha curcas]
20 Hb_010053_010 0.3387254049 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]

Gene co-expression network

sample Hb_006655_040 Hb_006655_040 Hb_000809_070 Hb_000809_070 Hb_006655_040--Hb_000809_070 Hb_003095_090 Hb_003095_090 Hb_006655_040--Hb_003095_090 Hb_003626_010 Hb_003626_010 Hb_006655_040--Hb_003626_010 Hb_160246_010 Hb_160246_010 Hb_006655_040--Hb_160246_010 Hb_007451_080 Hb_007451_080 Hb_006655_040--Hb_007451_080 Hb_002374_500 Hb_002374_500 Hb_006655_040--Hb_002374_500 Hb_000809_070--Hb_007451_080 Hb_000809_070--Hb_003095_090 Hb_132330_010 Hb_132330_010 Hb_000809_070--Hb_132330_010 Hb_027028_010 Hb_027028_010 Hb_000809_070--Hb_027028_010 Hb_003850_030 Hb_003850_030 Hb_000809_070--Hb_003850_030 Hb_003095_090--Hb_002374_500 Hb_005316_010 Hb_005316_010 Hb_003095_090--Hb_005316_010 Hb_000022_210 Hb_000022_210 Hb_003095_090--Hb_000022_210 Hb_002671_070 Hb_002671_070 Hb_003095_090--Hb_002671_070 Hb_005946_130 Hb_005946_130 Hb_003095_090--Hb_005946_130 Hb_001048_120 Hb_001048_120 Hb_003095_090--Hb_001048_120 Hb_003626_010--Hb_007451_080 Hb_003626_010--Hb_003095_090 Hb_002791_040 Hb_002791_040 Hb_003626_010--Hb_002791_040 Hb_001190_050 Hb_001190_050 Hb_003626_010--Hb_001190_050 Hb_008014_060 Hb_008014_060 Hb_003626_010--Hb_008014_060 Hb_001143_150 Hb_001143_150 Hb_160246_010--Hb_001143_150 Hb_000175_150 Hb_000175_150 Hb_160246_010--Hb_000175_150 Hb_003643_030 Hb_003643_030 Hb_160246_010--Hb_003643_030 Hb_003266_070 Hb_003266_070 Hb_160246_010--Hb_003266_070 Hb_000112_100 Hb_000112_100 Hb_160246_010--Hb_000112_100 Hb_002805_260 Hb_002805_260 Hb_007451_080--Hb_002805_260 Hb_007654_010 Hb_007654_010 Hb_007451_080--Hb_007654_010 Hb_007645_110 Hb_007645_110 Hb_007451_080--Hb_007645_110 Hb_007451_080--Hb_027028_010 Hb_153470_010 Hb_153470_010 Hb_002374_500--Hb_153470_010 Hb_024898_020 Hb_024898_020 Hb_002374_500--Hb_024898_020 Hb_041362_010 Hb_041362_010 Hb_002374_500--Hb_041362_010 Hb_002374_500--Hb_003626_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0276805 6.4506 0.996809 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0759234 3.28299 0.321144 5.866 0.237409

CAGE analysis