Hb_024898_020

Information

Type -
Description -
Location Contig24898: 34901-39353
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024898_020 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_002374_500 0.2188596354 - - PREDICTED: putative F-box protein PP2-B12 [Gossypium raimondii]
3 Hb_153470_010 0.2799694575 - - PREDICTED: uncharacterized protein LOC104804963 [Tarenaya hassleriana]
4 Hb_001798_020 0.3036181053 - - PREDICTED: uncharacterized protein LOC104594032 [Nelumbo nucifera]
5 Hb_164646_010 0.3076726697 - - PREDICTED: acidic endochitinase-like [Pyrus x bretschneideri]
6 Hb_083103_030 0.3249518485 - - putative retrotransposon protein [Malus domestica]
7 Hb_103832_030 0.3249730275 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
8 Hb_172503_010 0.3249825008 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
9 Hb_002791_040 0.3254020836 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
10 Hb_115472_010 0.3254876073 - - -
11 Hb_002740_020 0.3257804935 - - -
12 Hb_022137_030 0.3264619023 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
13 Hb_006655_040 0.3277134508 - - tau class glutathione transferase GSTU15 [Populus trichocarpa]
14 Hb_001190_050 0.3301628204 - - hypothetical protein JCGZ_20709 [Jatropha curcas]
15 Hb_001995_020 0.3312985585 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
16 Hb_003626_010 0.3337391946 - - hypothetical protein JCGZ_07378 [Jatropha curcas]
17 Hb_036790_010 0.3355640752 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
18 Hb_012368_060 0.3404697125 - - -
19 Hb_011457_060 0.340586611 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
20 Hb_001369_280 0.3408134955 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like isoform X3 [Solanum tuberosum]

Gene co-expression network

sample Hb_024898_020 Hb_024898_020 Hb_002374_500 Hb_002374_500 Hb_024898_020--Hb_002374_500 Hb_153470_010 Hb_153470_010 Hb_024898_020--Hb_153470_010 Hb_001798_020 Hb_001798_020 Hb_024898_020--Hb_001798_020 Hb_164646_010 Hb_164646_010 Hb_024898_020--Hb_164646_010 Hb_083103_030 Hb_083103_030 Hb_024898_020--Hb_083103_030 Hb_103832_030 Hb_103832_030 Hb_024898_020--Hb_103832_030 Hb_002374_500--Hb_153470_010 Hb_003095_090 Hb_003095_090 Hb_002374_500--Hb_003095_090 Hb_041362_010 Hb_041362_010 Hb_002374_500--Hb_041362_010 Hb_006655_040 Hb_006655_040 Hb_002374_500--Hb_006655_040 Hb_003626_010 Hb_003626_010 Hb_002374_500--Hb_003626_010 Hb_006355_030 Hb_006355_030 Hb_153470_010--Hb_006355_030 Hb_153470_010--Hb_041362_010 Hb_003141_020 Hb_003141_020 Hb_153470_010--Hb_003141_020 Hb_007520_040 Hb_007520_040 Hb_153470_010--Hb_007520_040 Hb_001104_050 Hb_001104_050 Hb_001798_020--Hb_001104_050 Hb_001391_120 Hb_001391_120 Hb_001798_020--Hb_001391_120 Hb_012368_070 Hb_012368_070 Hb_001798_020--Hb_012368_070 Hb_008479_020 Hb_008479_020 Hb_001798_020--Hb_008479_020 Hb_003052_230 Hb_003052_230 Hb_001798_020--Hb_003052_230 Hb_014497_080 Hb_014497_080 Hb_164646_010--Hb_014497_080 Hb_002701_190 Hb_002701_190 Hb_164646_010--Hb_002701_190 Hb_000087_090 Hb_000087_090 Hb_164646_010--Hb_000087_090 Hb_002890_070 Hb_002890_070 Hb_164646_010--Hb_002890_070 Hb_003732_040 Hb_003732_040 Hb_164646_010--Hb_003732_040 Hb_000164_060 Hb_000164_060 Hb_164646_010--Hb_000164_060 Hb_083103_030--Hb_103832_030 Hb_172503_010 Hb_172503_010 Hb_083103_030--Hb_172503_010 Hb_115472_010 Hb_115472_010 Hb_083103_030--Hb_115472_010 Hb_002740_020 Hb_002740_020 Hb_083103_030--Hb_002740_020 Hb_022137_030 Hb_022137_030 Hb_083103_030--Hb_022137_030 Hb_001995_020 Hb_001995_020 Hb_083103_030--Hb_001995_020 Hb_103832_030--Hb_172503_010 Hb_103832_030--Hb_115472_010 Hb_103832_030--Hb_002740_020 Hb_103832_030--Hb_022137_030 Hb_103832_030--Hb_001995_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00376474 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00862649 0 0.00683379 0

CAGE analysis