Hb_164646_010

Information

Type -
Description -
Location Contig164646: 94-1077
Sequence    

Annotation

kegg
ID pxb:103931118
description acidic endochitinase-like
nr
ID XP_009338801.1
description PREDICTED: acidic endochitinase-like [Pyrus x bretschneideri]
swissprot
ID P51614
description Acidic endochitinase OS=Vitis vinifera GN=CHIT3 PE=2 SV=1
trembl
ID B9I8S5
description Chitinase family protein OS=Populus trichocarpa GN=POPTR_0014s08850g PE=3 SV=2
Gene Ontology
ID GO:0004553
description basic endochitinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164646_010 0.0 - - PREDICTED: acidic endochitinase-like [Pyrus x bretschneideri]
2 Hb_014497_080 0.2610431467 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
3 Hb_002701_190 0.2610898999 - - PREDICTED: uncharacterized protein LOC105646742 [Jatropha curcas]
4 Hb_000087_090 0.2651145515 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
5 Hb_002890_070 0.2765211775 - - ATP-dependent RNA helicase family protein [Populus trichocarpa]
6 Hb_003732_040 0.2796253089 - - putative esterase family protein [Populus trichocarpa]
7 Hb_000164_060 0.2887983282 - - -
8 Hb_001623_070 0.2913923257 - - cytochrome B5 isoform 1, putative [Ricinus communis]
9 Hb_012368_070 0.292107787 - - RNA binding protein, putative [Ricinus communis]
10 Hb_001729_040 0.2935081741 - - hypothetical protein glysoja_049826, partial [Glycine soja]
11 Hb_002890_080 0.2975834307 - - conserved hypothetical protein [Ricinus communis]
12 Hb_015220_010 0.3010498248 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
13 Hb_001439_090 0.3026006667 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000892_020 0.3061602678 - - unnamed protein product [Vitis vinifera]
15 Hb_024898_020 0.3076726697 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_003687_220 0.3083608869 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
17 Hb_033834_050 0.3098456335 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011609_110 0.3102920331 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
19 Hb_092891_010 0.312429778 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
20 Hb_000062_300 0.3166000256 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]

Gene co-expression network

sample Hb_164646_010 Hb_164646_010 Hb_014497_080 Hb_014497_080 Hb_164646_010--Hb_014497_080 Hb_002701_190 Hb_002701_190 Hb_164646_010--Hb_002701_190 Hb_000087_090 Hb_000087_090 Hb_164646_010--Hb_000087_090 Hb_002890_070 Hb_002890_070 Hb_164646_010--Hb_002890_070 Hb_003732_040 Hb_003732_040 Hb_164646_010--Hb_003732_040 Hb_000164_060 Hb_000164_060 Hb_164646_010--Hb_000164_060 Hb_000062_300 Hb_000062_300 Hb_014497_080--Hb_000062_300 Hb_014497_080--Hb_003732_040 Hb_033834_050 Hb_033834_050 Hb_014497_080--Hb_033834_050 Hb_042871_010 Hb_042871_010 Hb_014497_080--Hb_042871_010 Hb_003398_020 Hb_003398_020 Hb_014497_080--Hb_003398_020 Hb_086692_020 Hb_086692_020 Hb_014497_080--Hb_086692_020 Hb_000139_430 Hb_000139_430 Hb_002701_190--Hb_000139_430 Hb_000042_360 Hb_000042_360 Hb_002701_190--Hb_000042_360 Hb_004679_060 Hb_004679_060 Hb_002701_190--Hb_004679_060 Hb_001591_010 Hb_001591_010 Hb_002701_190--Hb_001591_010 Hb_006028_020 Hb_006028_020 Hb_002701_190--Hb_006028_020 Hb_003266_070 Hb_003266_070 Hb_000087_090--Hb_003266_070 Hb_185111_010 Hb_185111_010 Hb_000087_090--Hb_185111_010 Hb_000318_090 Hb_000318_090 Hb_000087_090--Hb_000318_090 Hb_000892_020 Hb_000892_020 Hb_000087_090--Hb_000892_020 Hb_000718_050 Hb_000718_050 Hb_000087_090--Hb_000718_050 Hb_001729_040 Hb_001729_040 Hb_000087_090--Hb_001729_040 Hb_001623_070 Hb_001623_070 Hb_002890_070--Hb_001623_070 Hb_006277_070 Hb_006277_070 Hb_002890_070--Hb_006277_070 Hb_012573_010 Hb_012573_010 Hb_002890_070--Hb_012573_010 Hb_002890_080 Hb_002890_080 Hb_002890_070--Hb_002890_080 Hb_002890_070--Hb_003732_040 Hb_001439_090 Hb_001439_090 Hb_002890_070--Hb_001439_090 Hb_003732_040--Hb_000062_300 Hb_003732_040--Hb_006277_070 Hb_003732_040--Hb_042871_010 Hb_003732_040--Hb_033834_050 Hb_147793_010 Hb_147793_010 Hb_003732_040--Hb_147793_010 Hb_000164_060--Hb_147793_010 Hb_000111_020 Hb_000111_020 Hb_000164_060--Hb_000111_020 Hb_185736_010 Hb_185736_010 Hb_000164_060--Hb_185736_010 Hb_001627_030 Hb_001627_030 Hb_000164_060--Hb_001627_030 Hb_007273_010 Hb_007273_010 Hb_000164_060--Hb_007273_010 Hb_187134_010 Hb_187134_010 Hb_000164_060--Hb_187134_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0225696 0.0641159 0.729627 0.577564 0.0664424 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.103413 4.2293 0 1.3579 0

CAGE analysis