Hb_002701_190

Information

Type -
Description -
Location Contig2701: 188079-188837
Sequence    

Annotation

kegg
ID pxb:103962745
description uncharacterized LOC103962745
nr
ID XP_012088052.1
description PREDICTED: uncharacterized protein LOC105646742 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25584 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28337: 188083-188839
cDNA
(Sanger)
(ID:Location)		 027_P02.ab1: 188083-188830

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_190 0.0 - - PREDICTED: uncharacterized protein LOC105646742 [Jatropha curcas]
2 Hb_000139_430 0.2356627724 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
3 Hb_164646_010 0.2610898999 - - PREDICTED: acidic endochitinase-like [Pyrus x bretschneideri]
4 Hb_000042_360 0.2668993635 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004679_060 0.2696132753 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001591_010 0.2745360609 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
7 Hb_006028_020 0.2747027903 - - PREDICTED: 60S ribosomal protein L38-like [Cicer arietinum]
8 Hb_002686_180 0.2790612122 - - PREDICTED: early nodulin-93-like [Populus euphratica]
9 Hb_023936_010 0.2833196015 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000139_420 0.2862947408 - - Stem-specific protein TSJT1, putative [Ricinus communis]
11 Hb_009680_040 0.286731077 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_000134_320 0.289584545 - - hypothetical protein PRUPE_ppa013450mg [Prunus persica]
13 Hb_000289_070 0.2901635696 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009615_020 0.291124124 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7-like [Jatropha curcas]
15 Hb_007313_080 0.2925139015 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
16 Hb_001789_050 0.293729339 - - 60S ribosomal protein L36-2 [Morus notabilis]
17 Hb_003057_020 0.2973206278 - - 40S ribosomal protein S23, putative [Ricinus communis]
18 Hb_002811_090 0.2986364103 - - 40S ribosomal protein S24A [Hevea brasiliensis]
19 Hb_002768_090 0.2986839889 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
20 Hb_170426_010 0.3000624583 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]

Gene co-expression network

sample Hb_002701_190 Hb_002701_190 Hb_000139_430 Hb_000139_430 Hb_002701_190--Hb_000139_430 Hb_164646_010 Hb_164646_010 Hb_002701_190--Hb_164646_010 Hb_000042_360 Hb_000042_360 Hb_002701_190--Hb_000042_360 Hb_004679_060 Hb_004679_060 Hb_002701_190--Hb_004679_060 Hb_001591_010 Hb_001591_010 Hb_002701_190--Hb_001591_010 Hb_006028_020 Hb_006028_020 Hb_002701_190--Hb_006028_020 Hb_000139_430--Hb_006028_020 Hb_001512_050 Hb_001512_050 Hb_000139_430--Hb_001512_050 Hb_027472_160 Hb_027472_160 Hb_000139_430--Hb_027472_160 Hb_000212_210 Hb_000212_210 Hb_000139_430--Hb_000212_210 Hb_007245_080 Hb_007245_080 Hb_000139_430--Hb_007245_080 Hb_002686_180 Hb_002686_180 Hb_000139_430--Hb_002686_180 Hb_014497_080 Hb_014497_080 Hb_164646_010--Hb_014497_080 Hb_000087_090 Hb_000087_090 Hb_164646_010--Hb_000087_090 Hb_002890_070 Hb_002890_070 Hb_164646_010--Hb_002890_070 Hb_003732_040 Hb_003732_040 Hb_164646_010--Hb_003732_040 Hb_000164_060 Hb_000164_060 Hb_164646_010--Hb_000164_060 Hb_000005_400 Hb_000005_400 Hb_000042_360--Hb_000005_400 Hb_007441_240 Hb_007441_240 Hb_000042_360--Hb_007441_240 Hb_000270_740 Hb_000270_740 Hb_000042_360--Hb_000270_740 Hb_000116_040 Hb_000116_040 Hb_000042_360--Hb_000116_040 Hb_002900_130 Hb_002900_130 Hb_000042_360--Hb_002900_130 Hb_001635_130 Hb_001635_130 Hb_000042_360--Hb_001635_130 Hb_170426_010 Hb_170426_010 Hb_004679_060--Hb_170426_010 Hb_001449_100 Hb_001449_100 Hb_004679_060--Hb_001449_100 Hb_007313_080 Hb_007313_080 Hb_004679_060--Hb_007313_080 Hb_000189_540 Hb_000189_540 Hb_004679_060--Hb_000189_540 Hb_020805_060 Hb_020805_060 Hb_004679_060--Hb_020805_060 Hb_004787_040 Hb_004787_040 Hb_004679_060--Hb_004787_040 Hb_000139_420 Hb_000139_420 Hb_001591_010--Hb_000139_420 Hb_000390_270 Hb_000390_270 Hb_001591_010--Hb_000390_270 Hb_000612_040 Hb_000612_040 Hb_001591_010--Hb_000612_040 Hb_000289_070 Hb_000289_070 Hb_001591_010--Hb_000289_070 Hb_003750_030 Hb_003750_030 Hb_001591_010--Hb_003750_030 Hb_000134_320 Hb_000134_320 Hb_001591_010--Hb_000134_320 Hb_002811_090 Hb_002811_090 Hb_006028_020--Hb_002811_090 Hb_006028_020--Hb_027472_160 Hb_132840_140 Hb_132840_140 Hb_006028_020--Hb_132840_140 Hb_001431_080 Hb_001431_080 Hb_006028_020--Hb_001431_080 Hb_006028_020--Hb_002686_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.81386 0.516146 30.1381 14.0348 4.07791 3.50562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.68502 68.1969 6.40467 32.7229 0

CAGE analysis