Hb_000390_270

Information

Type -
Description -
Location Contig390: 280934-282271
Sequence    

Annotation

kegg
ID rcu:RCOM_1327040
description hypothetical protein
nr
ID XP_002520060.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q67A25
description S-norcoclaurine synthase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1
trembl
ID B9S241
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1327040 PE=4 SV=1
Gene Ontology
ID GO:0006952
description s-norcoclaurine synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39129: 280980-282233
cDNA
(Sanger)
(ID:Location)		 038_B16.ab1: 280980-282190

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_270 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002701_010 0.176885057 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_000009_050 0.203027381 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
4 Hb_007017_010 0.2040450018 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
5 Hb_004712_210 0.210423774 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Jatropha curcas]
6 Hb_002307_310 0.2140288785 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
7 Hb_006355_040 0.2141021648 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
8 Hb_002534_100 0.2152973157 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
9 Hb_003669_020 0.2153024928 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
10 Hb_000099_150 0.2153868927 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
11 Hb_000071_170 0.2182746985 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
12 Hb_000739_300 0.2203480646 - - PREDICTED: uncharacterized protein LOC105643092 [Jatropha curcas]
13 Hb_002027_350 0.2203626712 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
14 Hb_008948_120 0.2246095336 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
15 Hb_002232_060 0.2252375135 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
16 Hb_007304_090 0.2258206664 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
17 Hb_001804_080 0.2258409305 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
18 Hb_011618_060 0.2267159064 - - PREDICTED: DNA-repair protein XRCC1 [Jatropha curcas]
19 Hb_000419_020 0.2278890608 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000086_230 0.2281425389 - - serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000390_270 Hb_000390_270 Hb_002701_010 Hb_002701_010 Hb_000390_270--Hb_002701_010 Hb_000009_050 Hb_000009_050 Hb_000390_270--Hb_000009_050 Hb_007017_010 Hb_007017_010 Hb_000390_270--Hb_007017_010 Hb_004712_210 Hb_004712_210 Hb_000390_270--Hb_004712_210 Hb_002307_310 Hb_002307_310 Hb_000390_270--Hb_002307_310 Hb_006355_040 Hb_006355_040 Hb_000390_270--Hb_006355_040 Hb_022318_020 Hb_022318_020 Hb_002701_010--Hb_022318_020 Hb_163256_020 Hb_163256_020 Hb_002701_010--Hb_163256_020 Hb_002701_010--Hb_006355_040 Hb_000424_200 Hb_000424_200 Hb_002701_010--Hb_000424_200 Hb_000099_150 Hb_000099_150 Hb_002701_010--Hb_000099_150 Hb_002701_010--Hb_002307_310 Hb_000304_030 Hb_000304_030 Hb_000009_050--Hb_000304_030 Hb_001604_150 Hb_001604_150 Hb_000009_050--Hb_001604_150 Hb_000009_050--Hb_002701_010 Hb_000009_050--Hb_002307_310 Hb_000684_040 Hb_000684_040 Hb_000009_050--Hb_000684_040 Hb_002631_180 Hb_002631_180 Hb_000009_050--Hb_002631_180 Hb_002235_080 Hb_002235_080 Hb_007017_010--Hb_002235_080 Hb_003327_050 Hb_003327_050 Hb_007017_010--Hb_003327_050 Hb_000028_100 Hb_000028_100 Hb_007017_010--Hb_000028_100 Hb_000487_230 Hb_000487_230 Hb_007017_010--Hb_000487_230 Hb_000099_070 Hb_000099_070 Hb_007017_010--Hb_000099_070 Hb_183612_060 Hb_183612_060 Hb_007017_010--Hb_183612_060 Hb_002534_100 Hb_002534_100 Hb_004712_210--Hb_002534_100 Hb_002303_020 Hb_002303_020 Hb_004712_210--Hb_002303_020 Hb_010578_080 Hb_010578_080 Hb_004712_210--Hb_010578_080 Hb_044653_040 Hb_044653_040 Hb_004712_210--Hb_044653_040 Hb_009296_070 Hb_009296_070 Hb_004712_210--Hb_009296_070 Hb_002173_070 Hb_002173_070 Hb_004712_210--Hb_002173_070 Hb_002307_310--Hb_004712_210 Hb_002307_310--Hb_022318_020 Hb_015183_060 Hb_015183_060 Hb_002307_310--Hb_015183_060 Hb_002307_310--Hb_001604_150 Hb_002307_310--Hb_006355_040 Hb_001718_030 Hb_001718_030 Hb_006355_040--Hb_001718_030 Hb_005843_140 Hb_005843_140 Hb_006355_040--Hb_005843_140 Hb_001188_030 Hb_001188_030 Hb_006355_040--Hb_001188_030 Hb_002968_040 Hb_002968_040 Hb_006355_040--Hb_002968_040 Hb_003669_020 Hb_003669_020 Hb_006355_040--Hb_003669_020 Hb_006198_070 Hb_006198_070 Hb_006355_040--Hb_006198_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.2652 65.2183 70.4621 34.8411 11.6761 11.8589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3021 181.848 50.312 95.3792 56.2581

CAGE analysis