Hb_000139_420

Information

Type -
Description -
Location Contig139: 417661-422923
Sequence    

Annotation

kegg
ID rcu:RCOM_0913370
description Stem-specific protein TSJT1, putative
nr
ID XP_002517179.1
description Stem-specific protein TSJT1, putative [Ricinus communis]
swissprot
ID P24805
description Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1
trembl
ID B9RTW0
description Stem-specific protein TSJT1, putative OS=Ricinus communis GN=RCOM_0913370 PE=4 SV=1
Gene Ontology
ID GO:0005886
description stem-specific protein tsjt1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10673: 420158-420494
cDNA
(Sanger)
(ID:Location)		 012_I23.ab1: 418739-436874 , 050_P07.ab1: 417662-418223

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_420 0.0 - - Stem-specific protein TSJT1, putative [Ricinus communis]
2 Hb_000331_640 0.17543051 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
3 Hb_000086_230 0.1761494311 - - serine/threonine-protein kinase, putative [Ricinus communis]
4 Hb_000258_350 0.1774616053 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
5 Hb_009265_090 0.1801793967 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
6 Hb_011671_440 0.1804055333 - - ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
7 Hb_114893_030 0.1806637908 - - PREDICTED: ribosome-recycling factor, chloroplastic [Jatropha curcas]
8 Hb_001754_250 0.1831361857 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
9 Hb_000576_060 0.1851595425 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
10 Hb_126861_010 0.1851933855 - - hypothetical protein M569_05914, partial [Genlisea aurea]
11 Hb_001979_040 0.1852063987 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
12 Hb_000264_210 0.1853435406 - - tfiih, polypeptide, putative [Ricinus communis]
13 Hb_009880_010 0.1858543398 - - PREDICTED: cytochrome c [Jatropha curcas]
14 Hb_000788_010 0.18745783 - - 40S ribosomal protein S16A [Hevea brasiliensis]
15 Hb_000815_060 0.1879742407 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
16 Hb_022425_040 0.1886927116 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
17 Hb_001691_140 0.1891480727 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
18 Hb_001863_090 0.1899870346 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
19 Hb_000134_320 0.190410747 - - hypothetical protein PRUPE_ppa013450mg [Prunus persica]
20 Hb_001789_050 0.1922461234 - - 60S ribosomal protein L36-2 [Morus notabilis]

Gene co-expression network

sample Hb_000139_420 Hb_000139_420 Hb_000331_640 Hb_000331_640 Hb_000139_420--Hb_000331_640 Hb_000086_230 Hb_000086_230 Hb_000139_420--Hb_000086_230 Hb_000258_350 Hb_000258_350 Hb_000139_420--Hb_000258_350 Hb_009265_090 Hb_009265_090 Hb_000139_420--Hb_009265_090 Hb_011671_440 Hb_011671_440 Hb_000139_420--Hb_011671_440 Hb_114893_030 Hb_114893_030 Hb_000139_420--Hb_114893_030 Hb_000329_020 Hb_000329_020 Hb_000331_640--Hb_000329_020 Hb_002909_130 Hb_002909_130 Hb_000331_640--Hb_002909_130 Hb_000042_260 Hb_000042_260 Hb_000331_640--Hb_000042_260 Hb_009880_010 Hb_009880_010 Hb_000331_640--Hb_009880_010 Hb_000062_650 Hb_000062_650 Hb_000331_640--Hb_000062_650 Hb_002811_080 Hb_002811_080 Hb_000331_640--Hb_002811_080 Hb_001691_140 Hb_001691_140 Hb_000086_230--Hb_001691_140 Hb_003064_020 Hb_003064_020 Hb_000086_230--Hb_003064_020 Hb_000084_160 Hb_000084_160 Hb_000086_230--Hb_000084_160 Hb_000099_150 Hb_000099_150 Hb_000086_230--Hb_000099_150 Hb_000589_120 Hb_000589_120 Hb_000086_230--Hb_000589_120 Hb_001828_060 Hb_001828_060 Hb_000086_230--Hb_001828_060 Hb_000258_350--Hb_114893_030 Hb_000698_030 Hb_000698_030 Hb_000258_350--Hb_000698_030 Hb_011609_100 Hb_011609_100 Hb_000258_350--Hb_011609_100 Hb_172632_090 Hb_172632_090 Hb_000258_350--Hb_172632_090 Hb_000258_350--Hb_009265_090 Hb_003126_080 Hb_003126_080 Hb_000258_350--Hb_003126_080 Hb_002375_090 Hb_002375_090 Hb_009265_090--Hb_002375_090 Hb_000264_090 Hb_000264_090 Hb_009265_090--Hb_000264_090 Hb_009265_090--Hb_114893_030 Hb_015279_010 Hb_015279_010 Hb_009265_090--Hb_015279_010 Hb_000917_110 Hb_000917_110 Hb_009265_090--Hb_000917_110 Hb_000413_280 Hb_000413_280 Hb_011671_440--Hb_000413_280 Hb_091433_020 Hb_091433_020 Hb_011671_440--Hb_091433_020 Hb_005914_010 Hb_005914_010 Hb_011671_440--Hb_005914_010 Hb_004767_080 Hb_004767_080 Hb_011671_440--Hb_004767_080 Hb_180074_010 Hb_180074_010 Hb_011671_440--Hb_180074_010 Hb_000538_120 Hb_000538_120 Hb_011671_440--Hb_000538_120 Hb_002518_080 Hb_002518_080 Hb_114893_030--Hb_002518_080 Hb_022425_040 Hb_022425_040 Hb_114893_030--Hb_022425_040 Hb_114893_030--Hb_000917_110 Hb_000127_180 Hb_000127_180 Hb_114893_030--Hb_000127_180 Hb_114893_030--Hb_015279_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.1282 30.9377 52.1836 21.6136 48.7024 19.3025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.639 212.413 45.478 116.155 12.4793

CAGE analysis