Hb_011609_100

Information

Type -
Description -
Location Contig11609: 102099-103563
Sequence    

Annotation

kegg
ID rcu:RCOM_0760850
description Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative
nr
ID XP_012077960.1
description PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SYB4
description Plastid-specific 30S ribosomal protein 3, chloroplast, putative OS=Ricinus communis GN=RCOM_0760850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04959: 102563-102682
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_100 0.0 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
2 Hb_003992_240 0.0733688878 - - -
3 Hb_005322_040 0.0822810103 - - 60S ribosomal protein L9, putative [Ricinus communis]
4 Hb_003125_200 0.0831530206 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
5 Hb_047503_010 0.0842293587 - - PREDICTED: putative protein N-methyltransferase YNL024C [Jatropha curcas]
6 Hb_000959_210 0.0848447288 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
7 Hb_002346_020 0.0852569073 - - -
8 Hb_012762_050 0.0869740734 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
9 Hb_000663_040 0.0876006901 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
10 Hb_001481_090 0.0885137891 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
11 Hb_005332_070 0.0900856144 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
12 Hb_001369_220 0.0901647354 - - PREDICTED: structural maintenance of chromosomes protein 6B-like isoform X2 [Jatropha curcas]
13 Hb_000258_350 0.0909434064 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
14 Hb_000275_170 0.091090275 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
15 Hb_001159_140 0.0917035517 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
16 Hb_002660_080 0.0922461055 - - 60S ribosomal protein L12A [Hevea brasiliensis]
17 Hb_004931_070 0.0943037742 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
18 Hb_001305_010 0.094571998 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
19 Hb_011571_020 0.0950306936 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
20 Hb_001226_160 0.0950921159 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011609_100 Hb_011609_100 Hb_003992_240 Hb_003992_240 Hb_011609_100--Hb_003992_240 Hb_005322_040 Hb_005322_040 Hb_011609_100--Hb_005322_040 Hb_003125_200 Hb_003125_200 Hb_011609_100--Hb_003125_200 Hb_047503_010 Hb_047503_010 Hb_011609_100--Hb_047503_010 Hb_000959_210 Hb_000959_210 Hb_011609_100--Hb_000959_210 Hb_002346_020 Hb_002346_020 Hb_011609_100--Hb_002346_020 Hb_114893_030 Hb_114893_030 Hb_003992_240--Hb_114893_030 Hb_000788_100 Hb_000788_100 Hb_003992_240--Hb_000788_100 Hb_000012_220 Hb_000012_220 Hb_003992_240--Hb_000012_220 Hb_015279_010 Hb_015279_010 Hb_003992_240--Hb_015279_010 Hb_022425_040 Hb_022425_040 Hb_003992_240--Hb_022425_040 Hb_004787_060 Hb_004787_060 Hb_005322_040--Hb_004787_060 Hb_005322_040--Hb_000012_220 Hb_010921_010 Hb_010921_010 Hb_005322_040--Hb_010921_010 Hb_013405_090 Hb_013405_090 Hb_005322_040--Hb_013405_090 Hb_001512_060 Hb_001512_060 Hb_005322_040--Hb_001512_060 Hb_000465_460 Hb_000465_460 Hb_003125_200--Hb_000465_460 Hb_001758_100 Hb_001758_100 Hb_003125_200--Hb_001758_100 Hb_004931_070 Hb_004931_070 Hb_003125_200--Hb_004931_070 Hb_012389_020 Hb_012389_020 Hb_003125_200--Hb_012389_020 Hb_027472_040 Hb_027472_040 Hb_003125_200--Hb_027472_040 Hb_029388_020 Hb_029388_020 Hb_003125_200--Hb_029388_020 Hb_047503_010--Hb_002346_020 Hb_047503_010--Hb_001512_060 Hb_002888_030 Hb_002888_030 Hb_047503_010--Hb_002888_030 Hb_002232_440 Hb_002232_440 Hb_047503_010--Hb_002232_440 Hb_047503_010--Hb_003125_200 Hb_003935_020 Hb_003935_020 Hb_000959_210--Hb_003935_020 Hb_002652_030 Hb_002652_030 Hb_000959_210--Hb_002652_030 Hb_120410_010 Hb_120410_010 Hb_000959_210--Hb_120410_010 Hb_004032_430 Hb_004032_430 Hb_000959_210--Hb_004032_430 Hb_004093_090 Hb_004093_090 Hb_000959_210--Hb_004093_090 Hb_002530_030 Hb_002530_030 Hb_000959_210--Hb_002530_030 Hb_002346_020--Hb_001512_060 Hb_001552_020 Hb_001552_020 Hb_002346_020--Hb_001552_020 Hb_002928_130 Hb_002928_130 Hb_002346_020--Hb_002928_130 Hb_000096_070 Hb_000096_070 Hb_002346_020--Hb_000096_070 Hb_002027_250 Hb_002027_250 Hb_002346_020--Hb_002027_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.58285 4.42065 3.65739 2.20982 6.54028 5.27159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.96609 10.7322 5.11219 3.67305 2.00366

CAGE analysis