Hb_000042_360

Information

Type -
Description -
Location Contig42: 304494-304841
Sequence    

Annotation

kegg
ID rcu:RCOM_1255460
description hypothetical protein
nr
ID XP_002525769.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SIF0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1255460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41489: 304390-304870
cDNA
(Sanger)
(ID:Location)		 012_G03.ab1: 304390-304866 , 028_K21.ab1: 304390-304866

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_360 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000005_400 0.1626449821 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
3 Hb_007441_240 0.2138803828 - - ethphon-induced protein [Hevea brasiliensis]
4 Hb_000270_740 0.2289674962 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
5 Hb_000116_040 0.2322024135 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
6 Hb_002900_130 0.2325028563 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
7 Hb_001635_130 0.2371619733 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
8 Hb_000768_130 0.2466664593 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
9 Hb_027684_020 0.2517094531 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
10 Hb_001269_490 0.2534723569 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001016_080 0.2539708352 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
12 Hb_154141_030 0.2541766428 - - PREDICTED: histone H2AX [Populus euphratica]
13 Hb_158104_020 0.2547815417 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
14 Hb_162275_020 0.2589963381 - - phosphate transporter [Manihot esculenta]
15 Hb_000072_340 0.2605408741 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000739_140 0.2614676401 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
17 Hb_006816_270 0.2621171907 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002768_090 0.2633721934 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
19 Hb_005306_070 0.2640109901 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
20 Hb_007313_080 0.2658806249 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]

Gene co-expression network

sample Hb_000042_360 Hb_000042_360 Hb_000005_400 Hb_000005_400 Hb_000042_360--Hb_000005_400 Hb_007441_240 Hb_007441_240 Hb_000042_360--Hb_007441_240 Hb_000270_740 Hb_000270_740 Hb_000042_360--Hb_000270_740 Hb_000116_040 Hb_000116_040 Hb_000042_360--Hb_000116_040 Hb_002900_130 Hb_002900_130 Hb_000042_360--Hb_002900_130 Hb_001635_130 Hb_001635_130 Hb_000042_360--Hb_001635_130 Hb_007553_010 Hb_007553_010 Hb_000005_400--Hb_007553_010 Hb_162275_020 Hb_162275_020 Hb_000005_400--Hb_162275_020 Hb_000005_400--Hb_000270_740 Hb_158104_020 Hb_158104_020 Hb_000005_400--Hb_158104_020 Hb_003502_100 Hb_003502_100 Hb_000005_400--Hb_003502_100 Hb_000110_120 Hb_000110_120 Hb_007441_240--Hb_000110_120 Hb_000077_180 Hb_000077_180 Hb_007441_240--Hb_000077_180 Hb_000739_140 Hb_000739_140 Hb_007441_240--Hb_000739_140 Hb_000317_420 Hb_000317_420 Hb_007441_240--Hb_000317_420 Hb_028049_010 Hb_028049_010 Hb_007441_240--Hb_028049_010 Hb_000771_060 Hb_000771_060 Hb_007441_240--Hb_000771_060 Hb_000270_740--Hb_007441_240 Hb_004787_040 Hb_004787_040 Hb_000270_740--Hb_004787_040 Hb_000270_740--Hb_000739_140 Hb_000768_130 Hb_000768_130 Hb_000270_740--Hb_000768_130 Hb_000270_740--Hb_158104_020 Hb_000382_020 Hb_000382_020 Hb_000270_740--Hb_000382_020 Hb_000377_120 Hb_000377_120 Hb_000116_040--Hb_000377_120 Hb_027684_020 Hb_027684_020 Hb_000116_040--Hb_027684_020 Hb_001269_490 Hb_001269_490 Hb_000116_040--Hb_001269_490 Hb_008772_010 Hb_008772_010 Hb_000116_040--Hb_008772_010 Hb_001410_060 Hb_001410_060 Hb_000116_040--Hb_001410_060 Hb_000136_350 Hb_000136_350 Hb_000116_040--Hb_000136_350 Hb_154141_030 Hb_154141_030 Hb_002900_130--Hb_154141_030 Hb_002900_130--Hb_000768_130 Hb_007313_080 Hb_007313_080 Hb_002900_130--Hb_007313_080 Hb_002900_130--Hb_001635_130 Hb_003020_330 Hb_003020_330 Hb_002900_130--Hb_003020_330 Hb_002900_130--Hb_000739_140 Hb_001635_130--Hb_027684_020 Hb_001635_130--Hb_154141_030 Hb_005054_040 Hb_005054_040 Hb_001635_130--Hb_005054_040 Hb_001301_050 Hb_001301_050 Hb_001635_130--Hb_001301_050 Hb_002631_260 Hb_002631_260 Hb_001635_130--Hb_002631_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.28665 1.61145 9.83288 46.0966 1.26758 1.74507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7041 65.1088 8.23744 29.8548 1.03913

CAGE analysis