Hb_007553_010

Information

Type -
Description -
Location Contig7553: 1939-2529
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57021: 2275-3646
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007553_010 0.0 - - -
2 Hb_000005_400 0.1548645382 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
3 Hb_005245_070 0.2077650518 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
4 Hb_162275_020 0.2144594571 - - phosphate transporter [Manihot esculenta]
5 Hb_003502_100 0.2153295696 - - -
6 Hb_000049_050 0.2182314721 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
7 Hb_000260_790 0.2260882029 - - NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
8 Hb_001635_020 0.2296227757 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
9 Hb_002631_260 0.2337544139 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
10 Hb_000007_040 0.2367371166 - - hypothetical protein MIMGU_mgv1a017616mg [Erythranthe guttata]
11 Hb_000345_250 0.2410606899 - - cullin 1-like protein [Hevea brasiliensis]
12 Hb_000367_030 0.2415515001 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
13 Hb_175933_010 0.2441948556 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
14 Hb_116420_020 0.2446552358 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
15 Hb_138585_040 0.2464743646 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
16 Hb_135940_010 0.246984005 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
17 Hb_021596_080 0.2478594086 - - 50S ribosomal protein L33A [Hevea brasiliensis]
18 Hb_001195_490 0.251795145 - - hypothetical protein glysoja_018593 [Glycine soja]
19 Hb_158104_020 0.2528857577 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
20 Hb_004931_100 0.2576925094 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_007553_010 Hb_007553_010 Hb_000005_400 Hb_000005_400 Hb_007553_010--Hb_000005_400 Hb_005245_070 Hb_005245_070 Hb_007553_010--Hb_005245_070 Hb_162275_020 Hb_162275_020 Hb_007553_010--Hb_162275_020 Hb_003502_100 Hb_003502_100 Hb_007553_010--Hb_003502_100 Hb_000049_050 Hb_000049_050 Hb_007553_010--Hb_000049_050 Hb_000260_790 Hb_000260_790 Hb_007553_010--Hb_000260_790 Hb_000042_360 Hb_000042_360 Hb_000005_400--Hb_000042_360 Hb_000005_400--Hb_162275_020 Hb_000270_740 Hb_000270_740 Hb_000005_400--Hb_000270_740 Hb_158104_020 Hb_158104_020 Hb_000005_400--Hb_158104_020 Hb_000005_400--Hb_003502_100 Hb_000367_030 Hb_000367_030 Hb_005245_070--Hb_000367_030 Hb_000975_180 Hb_000975_180 Hb_005245_070--Hb_000975_180 Hb_005245_070--Hb_003502_100 Hb_021924_010 Hb_021924_010 Hb_005245_070--Hb_021924_010 Hb_004429_110 Hb_004429_110 Hb_005245_070--Hb_004429_110 Hb_004128_040 Hb_004128_040 Hb_005245_070--Hb_004128_040 Hb_017170_030 Hb_017170_030 Hb_162275_020--Hb_017170_030 Hb_000297_020 Hb_000297_020 Hb_162275_020--Hb_000297_020 Hb_006538_190 Hb_006538_190 Hb_162275_020--Hb_006538_190 Hb_000614_170 Hb_000614_170 Hb_162275_020--Hb_000614_170 Hb_000732_210 Hb_000732_210 Hb_162275_020--Hb_000732_210 Hb_003502_100--Hb_004128_040 Hb_003502_100--Hb_000975_180 Hb_001842_050 Hb_001842_050 Hb_003502_100--Hb_001842_050 Hb_003502_100--Hb_000367_030 Hb_009778_040 Hb_009778_040 Hb_003502_100--Hb_009778_040 Hb_138585_040 Hb_138585_040 Hb_000049_050--Hb_138585_040 Hb_002631_260 Hb_002631_260 Hb_000049_050--Hb_002631_260 Hb_000049_050--Hb_000260_790 Hb_000707_020 Hb_000707_020 Hb_000049_050--Hb_000707_020 Hb_001172_100 Hb_001172_100 Hb_000049_050--Hb_001172_100 Hb_005045_070 Hb_005045_070 Hb_000049_050--Hb_005045_070 Hb_077399_010 Hb_077399_010 Hb_000260_790--Hb_077399_010 Hb_000260_790--Hb_002631_260 Hb_001195_490 Hb_001195_490 Hb_000260_790--Hb_001195_490 Hb_000975_230 Hb_000975_230 Hb_000260_790--Hb_000975_230 Hb_000260_790--Hb_138585_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.89313 0.670233 0.6066 59.4513 0.525513 4.24953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.7745 55.779 21.3179 40.206 5.23839

CAGE analysis