Hb_083103_030

Information

Type -
Description -
Location Contig83103: 44743-49873
Sequence    

Annotation

kegg
ID sly:104649181
description uncharacterized LOC104649181
nr
ID CBL94172.1
description putative retrotransposon protein [Malus domestica]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID E4Z8P7
description Putative retrotransposon protein OS=Malus domestica PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083103_030 0.0 - - putative retrotransposon protein [Malus domestica]
2 Hb_103832_030 0.0038396717 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
3 Hb_172503_010 0.0046373859 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
4 Hb_115472_010 0.0196822294 - - -
5 Hb_002740_020 0.0245058026 - - -
6 Hb_022137_030 0.0331308386 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
7 Hb_001995_020 0.0697303334 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
8 Hb_036790_010 0.0885858646 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
9 Hb_012368_060 0.1075918891 - - -
10 Hb_011457_060 0.1080047764 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
11 Hb_001369_280 0.1087404545 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like isoform X3 [Solanum tuberosum]
12 Hb_001999_110 0.1090166423 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
13 Hb_000635_120 0.1091322863 - - -
14 Hb_035492_010 0.1126733639 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
15 Hb_000496_090 0.1211985714 - - PREDICTED: inhibitor of trypsin and hageman factor-like [Gossypium raimondii]
16 Hb_010267_010 0.1335918135 - - -
17 Hb_010120_010 0.1344743846 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
18 Hb_001369_330 0.1351316426 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004881_110 0.1352043291 - - -
20 Hb_000265_180 0.1370060839 - - Alpha/beta-Hydrolases superfamily protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_083103_030 Hb_083103_030 Hb_103832_030 Hb_103832_030 Hb_083103_030--Hb_103832_030 Hb_172503_010 Hb_172503_010 Hb_083103_030--Hb_172503_010 Hb_115472_010 Hb_115472_010 Hb_083103_030--Hb_115472_010 Hb_002740_020 Hb_002740_020 Hb_083103_030--Hb_002740_020 Hb_022137_030 Hb_022137_030 Hb_083103_030--Hb_022137_030 Hb_001995_020 Hb_001995_020 Hb_083103_030--Hb_001995_020 Hb_103832_030--Hb_172503_010 Hb_103832_030--Hb_115472_010 Hb_103832_030--Hb_002740_020 Hb_103832_030--Hb_022137_030 Hb_103832_030--Hb_001995_020 Hb_172503_010--Hb_115472_010 Hb_172503_010--Hb_002740_020 Hb_172503_010--Hb_022137_030 Hb_172503_010--Hb_001995_020 Hb_115472_010--Hb_002740_020 Hb_115472_010--Hb_022137_030 Hb_115472_010--Hb_001995_020 Hb_002740_020--Hb_022137_030 Hb_036790_010 Hb_036790_010 Hb_002740_020--Hb_036790_010 Hb_022137_030--Hb_036790_010 Hb_001995_020--Hb_002740_020 Hb_001995_020--Hb_022137_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00951874 0 0.00754387 0

CAGE analysis