Hb_022137_030

Information

Type -
Description -
Location Contig22137: 19272-20984
Sequence    

Annotation

kegg
ID pop:POPTR_0008s07110g
description POPTRDRAFT_765598; zinc finger family protein
nr
ID XP_012087052.1
description PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
swissprot
ID Q9SG96
description RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1
trembl
ID A0A067LC17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01233 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl66-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022137_030 0.0 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
2 Hb_002740_020 0.008627488 - - -
3 Hb_115472_010 0.0134516832 - - -
4 Hb_172503_010 0.0284949929 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
5 Hb_103832_030 0.0292924781 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
6 Hb_083103_030 0.0331308386 - - putative retrotransposon protein [Malus domestica]
7 Hb_036790_010 0.055511544 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
8 Hb_001995_020 0.0666125794 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
9 Hb_001369_280 0.0757041602 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like isoform X3 [Solanum tuberosum]
10 Hb_000496_090 0.0881904967 - - PREDICTED: inhibitor of trypsin and hageman factor-like [Gossypium raimondii]
11 Hb_012368_060 0.1405382862 - - -
12 Hb_011457_060 0.140949882 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
13 Hb_001999_110 0.1419585628 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
14 Hb_000635_120 0.142073841 - - -
15 Hb_035492_010 0.1456035333 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
16 Hb_010267_010 0.1664473757 - - -
17 Hb_010120_010 0.1673265171 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
18 Hb_001369_330 0.1679812058 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004881_110 0.1680536073 - - -
20 Hb_000265_180 0.1698482488 - - Alpha/beta-Hydrolases superfamily protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_022137_030 Hb_022137_030 Hb_002740_020 Hb_002740_020 Hb_022137_030--Hb_002740_020 Hb_115472_010 Hb_115472_010 Hb_022137_030--Hb_115472_010 Hb_172503_010 Hb_172503_010 Hb_022137_030--Hb_172503_010 Hb_103832_030 Hb_103832_030 Hb_022137_030--Hb_103832_030 Hb_083103_030 Hb_083103_030 Hb_022137_030--Hb_083103_030 Hb_036790_010 Hb_036790_010 Hb_022137_030--Hb_036790_010 Hb_002740_020--Hb_115472_010 Hb_002740_020--Hb_172503_010 Hb_002740_020--Hb_103832_030 Hb_002740_020--Hb_083103_030 Hb_002740_020--Hb_036790_010 Hb_115472_010--Hb_172503_010 Hb_115472_010--Hb_103832_030 Hb_115472_010--Hb_083103_030 Hb_001995_020 Hb_001995_020 Hb_115472_010--Hb_001995_020 Hb_172503_010--Hb_103832_030 Hb_172503_010--Hb_083103_030 Hb_172503_010--Hb_001995_020 Hb_103832_030--Hb_083103_030 Hb_103832_030--Hb_001995_020 Hb_083103_030--Hb_001995_020 Hb_001369_280 Hb_001369_280 Hb_036790_010--Hb_001369_280 Hb_000496_090 Hb_000496_090 Hb_036790_010--Hb_000496_090 Hb_036790_010--Hb_115472_010 Hb_036790_010--Hb_172503_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.645533 0 0.598309 0

CAGE analysis