Hb_001369_280

Information

Type -
Description -
Location Contig1369: 273281-273634
Sequence    

Annotation

kegg
ID sot:102604532
description pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like
nr
ID XP_006352878.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like isoform X3 [Solanum tuberosum]
swissprot
ID Q9LQ14
description Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2
trembl
ID M1BH85
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017527 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_280 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like isoform X3 [Solanum tuberosum]
2 Hb_000496_090 0.01251578 - - PREDICTED: inhibitor of trypsin and hageman factor-like [Gossypium raimondii]
3 Hb_036790_010 0.0202223219 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
4 Hb_022137_030 0.0757041602 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
5 Hb_002740_020 0.0843125527 - - -
6 Hb_115472_010 0.0891243768 - - -
7 Hb_172503_010 0.1041212961 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
8 Hb_103832_030 0.1049159911 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
9 Hb_001995_020 0.1080087817 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
10 Hb_083103_030 0.1087404545 - - putative retrotransposon protein [Malus domestica]
11 Hb_012368_060 0.2154349371 - - -
12 Hb_011457_060 0.2158425411 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
13 Hb_001999_110 0.2168413959 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
14 Hb_000635_120 0.2169555473 - - -
15 Hb_035492_010 0.2204503486 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
16 Hb_010267_010 0.2410725879 - - -
17 Hb_010120_010 0.2419417877 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
18 Hb_001369_330 0.2425890411 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004881_110 0.2426606187 - - -
20 Hb_000265_180 0.244434731 - - Alpha/beta-Hydrolases superfamily protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_001369_280 Hb_001369_280 Hb_000496_090 Hb_000496_090 Hb_001369_280--Hb_000496_090 Hb_036790_010 Hb_036790_010 Hb_001369_280--Hb_036790_010 Hb_022137_030 Hb_022137_030 Hb_001369_280--Hb_022137_030 Hb_002740_020 Hb_002740_020 Hb_001369_280--Hb_002740_020 Hb_115472_010 Hb_115472_010 Hb_001369_280--Hb_115472_010 Hb_172503_010 Hb_172503_010 Hb_001369_280--Hb_172503_010 Hb_000496_090--Hb_036790_010 Hb_000496_090--Hb_022137_030 Hb_000496_090--Hb_002740_020 Hb_000496_090--Hb_115472_010 Hb_000496_090--Hb_172503_010 Hb_036790_010--Hb_022137_030 Hb_036790_010--Hb_002740_020 Hb_036790_010--Hb_115472_010 Hb_036790_010--Hb_172503_010 Hb_022137_030--Hb_002740_020 Hb_022137_030--Hb_115472_010 Hb_022137_030--Hb_172503_010 Hb_103832_030 Hb_103832_030 Hb_022137_030--Hb_103832_030 Hb_083103_030 Hb_083103_030 Hb_022137_030--Hb_083103_030 Hb_002740_020--Hb_115472_010 Hb_002740_020--Hb_172503_010 Hb_002740_020--Hb_103832_030 Hb_002740_020--Hb_083103_030 Hb_115472_010--Hb_172503_010 Hb_115472_010--Hb_103832_030 Hb_115472_010--Hb_083103_030 Hb_001995_020 Hb_001995_020 Hb_115472_010--Hb_001995_020 Hb_172503_010--Hb_103832_030 Hb_172503_010--Hb_083103_030 Hb_172503_010--Hb_001995_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.200484 0 0.265732 0

CAGE analysis